{"id":"W2132636191","doi":"10.1371/journal.pone.0034585","title":"Genomic, Proteomic and Physiological Characterization of a T5-like Bacteriophage for Control of Shiga Toxin-Producing Escherichia coli O157:H7","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":78,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Canada; Université Laval; Agriculture and Agri-Food Canada; University of Guelph; Public Health Agency of Canada; Agriculture Food and Rural Development","funders":"Agriculture and Agri-Food Canada; Alberta Livestock and Meat Agency; Public Health Agency; Public Health Agency of Canada","keywords":"Siphoviridae; Bacteriophage; Escherichia coli; Biology; Myoviridae; Prophage; Microbiology; Phage therapy; ORFS; Open reading frame; Genetics; Molecular biology; Gene; Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001446605,0.0001189225,0.0002937563,0.00002071512,0.00006245533,0.00001227122,0.00009490422,0.000065628,0.0005722367],"category_scores_gemma":[0.00003348243,0.0001077376,0.00005207986,0.00006201005,0.0001099458,0.0002722446,0.000081649,0.00007625337,0.00002243437],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004576678,"about_ca_system_score_gemma":0.000005946693,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004623646,"about_ca_topic_score_gemma":0.000003606736,"domain_scores_codex":[0.9991771,0.00003933075,0.000275093,0.0002080294,0.00007596681,0.0002244947],"domain_scores_gemma":[0.9994893,0.00002579899,0.0002260927,0.0001696443,0.00001795507,0.00007121678],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001179733,0.0007102655,0.005094636,0.00008345523,0.00005224822,8.415791e-8,0.0003422966,0.000001714501,0.9933588,0.000007250541,0.000007765977,0.000223514],"study_design_scores_gemma":[0.0003230471,0.0001230314,0.4994972,0.00003076503,0.00005328524,6.290817e-7,0.000008632942,0.000139096,0.4996751,0.00000388181,0.00006993742,0.00007540155],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982693,0.00001862796,0.0004715562,0.00007498219,0.00006573807,0.0009202319,0.0001218144,0.0000154592,0.00004231928],"genre_scores_gemma":[0.996269,0.0000276112,0.003122596,0.0001353338,0.0000963948,0.00009373672,0.0000320178,0.00001591347,0.0002073828],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4944026,"threshold_uncertainty_score":0.6265591,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03043325546795692,"score_gpt":0.2194602823312425,"score_spread":0.1890270268632855,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}