{"id":"W2132721442","doi":"10.1534/g3.114.012294","title":"Comparative Mapping Between Coho Salmon (<i>Oncorhynchus kisutch</i>) and Three Other Salmonids Suggests a Role for Chromosomal Rearrangements in the Retention of Duplicated Regions Following a Whole Genome Duplication Event","year":2014,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":66,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada","funders":"National Marine Fisheries Service; School of Aquatic and Fishery Sciences; National Oceanic and Atmospheric Administration; University of Washington","keywords":"Biology; Oncorhynchus; Gene duplication; Synteny; Salmo; Genome; Genetics; Lineage (genetic); Evolutionary biology; Chromosome; Chromosomal rearrangement; Segmental duplication; Genome evolution; Phylogenetic tree; Karyotype; Gene; Gene family; Fish <Actinopterygii>; Fishery","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004609018,0.0002169333,0.0003503908,0.00004052145,0.0002728193,0.00005490305,0.000343629,0.0001257196,0.00001223002],"category_scores_gemma":[0.000007277993,0.0001109659,0.0001483817,0.0004420676,0.00007323101,0.00004874075,0.00009140201,0.0000808695,0.00000650849],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003601674,"about_ca_system_score_gemma":0.00001542012,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001331305,"about_ca_topic_score_gemma":0.001091184,"domain_scores_codex":[0.9983525,0.0001438837,0.0004877554,0.0004373058,0.0002471651,0.0003313339],"domain_scores_gemma":[0.9991534,0.0002217294,0.0002569835,0.0001967596,0.00009496303,0.00007619951],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001677576,0.00009638028,0.1631276,0.0000215711,0.00006867699,3.073004e-7,0.001048234,0.0002509964,0.7239753,0.0001087939,0.00001074609,0.1112746],"study_design_scores_gemma":[0.0006017808,0.0004871504,0.9419297,0.00004167847,0.0001070854,0.00000448612,0.0006644779,0.00293827,0.00350658,0.00359247,0.04582887,0.0002974634],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9831583,0.01379406,0.000616456,0.0008133825,0.00004335807,0.0012407,0.000164713,0.00002658035,0.0001424232],"genre_scores_gemma":[0.9976172,0.0006393822,0.0007866414,0.00006739087,0.0002518613,0.0002270553,0.0003655156,0.000004709593,0.00004025102],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.778802,"threshold_uncertainty_score":0.4525058,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0394220092508121,"score_gpt":0.2608341550685674,"score_spread":0.2214121458177553,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}