{"id":"W2132930442","doi":"10.1128/genomea.00005-13","title":"Genome Sequence of the “Indian Bison Type” Biotype of Mycobacterium avium subsp. <i>paratuberculosis</i> Strain S5","year":2013,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"Indian Council of Agricultural Research; Council of Scientific and Industrial Research, India","keywords":"Paratuberculosis; Biology; Whole genome sequencing; Strain (injury); Genome; Mycobacterium; Mycobacterium avium subsp. paratuberculosis; Microbiology; Type (biology); Virology; Genetics; Bacteria; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001412539,0.0003512371,0.0002739065,0.0008921233,0.0003615287,0.0004442419,0.0002990641,0.0004039863,0.002032877],"category_scores_gemma":[0.000430888,0.000143399,0.0005494202,0.001434328,0.0002080167,0.000209272,0.0002969237,0.0005954235,0.000775412],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004116864,"about_ca_system_score_gemma":0.0007455049,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01179173,"about_ca_topic_score_gemma":0.009067539,"domain_scores_codex":[0.9998667,0.00001509391,0.00001285294,0.00003772894,0.00004092981,0.00002667914],"domain_scores_gemma":[0.9996986,0.0000781555,0.0000797734,0.00002651409,0.00005686432,0.00006020573],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002356134,0.0001715005,0.01584243,0.0007410521,0.00008520608,0.001522157,0.001090583,0.0007633545,0.9395733,0.0009431717,0.004006216,0.0329048],"study_design_scores_gemma":[0.0001559794,0.0009916011,0.7333723,0.0002711704,0.0006218948,0.003100854,0.002175911,0.002764114,0.1339326,0.0007799093,0.121707,0.000126881],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9099987,0.001535277,0.006557112,0.0007792446,0.0002716391,0.0001444455,0.07532295,0.0003158539,0.005074862],"genre_scores_gemma":[0.7197687,0.00120807,0.01757414,0.0003772257,0.0001033531,0.00007903815,0.2560281,0.0001535622,0.004707714],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01179173,"threshold_uncertainty_score":0.0234462,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03000001420461101,"score_gpt":0.2817641577606939,"score_spread":0.2517641435560828,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}