{"id":"W2132930442","doi":"10.1128/genomea.00005-13","title":"Genome Sequence of the “Indian Bison Type” Biotype of Mycobacterium avium subsp. <i>paratuberculosis</i> Strain S5","year":2013,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"Indian Council of Agricultural Research; Council of Scientific and Industrial Research, India","keywords":"Paratuberculosis; Biology; Whole genome sequencing; Strain (injury); Genome; Mycobacterium; Mycobacterium avium subsp. paratuberculosis; Microbiology; Type (biology); Virology; Genetics; Bacteria; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003038571,0.0002468374,0.0004532376,0.0001615371,0.00008804393,0.00003581968,0.0004392125,0.0001362522,0.001876042],"category_scores_gemma":[0.0001136598,0.0001766057,0.0001650416,0.000751243,0.0002400148,0.000195088,0.0001903935,0.0002302416,0.0004044416],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001310662,"about_ca_system_score_gemma":0.0003542079,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006072489,"about_ca_topic_score_gemma":0.00002237032,"domain_scores_codex":[0.9976696,0.00009651534,0.0005495318,0.000363056,0.0007089458,0.0006123075],"domain_scores_gemma":[0.9980041,0.00004227573,0.0002482434,0.000842024,0.000583825,0.0002794687],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008595027,0.0002404264,0.08931499,0.0003005575,0.0001405544,0.000008740167,0.0004034862,0.000002836755,0.908337,0.00001998941,0.0008713902,0.000274106],"study_design_scores_gemma":[0.001316449,0.00121678,0.9311419,0.0001845326,0.0001303343,0.00002623069,0.0003053893,0.000009385682,0.02696124,0.0001053028,0.03830383,0.0002986121],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931893,0.0005010374,0.000003833075,0.000828667,0.0003691028,0.001117614,0.001295027,0.00002126961,0.002674167],"genre_scores_gemma":[0.9963938,0.0005145677,0.0001515021,0.0005298707,0.0001426504,0.00005982624,0.0007135174,0.00002957559,0.001464692],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8813757,"threshold_uncertainty_score":0.9990364,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03000001420461101,"score_gpt":0.2817641577606939,"score_spread":0.2517641435560828,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}