{"id":"W2133021642","doi":"10.1534/genetics.108.089730","title":"Intraspecific Phylogeographic Genomics From Multiple Complete mtDNA Genomes in Atlantic Cod (<i>Gadus morhua</i>): Origins of the “Codmother,” Transatlantic Vicariance and Midglacial Population Expansion","year":2008,"lang":"en","type":"article","venue":"Genetics","topic":"Identification and Quantification in Food","field":"Biochemistry, Genetics and Molecular Biology","cited_by":90,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Biology; Vicariance; Phylogeography; Coalescent theory; Population; Refugium (fishkeeping); Evolutionary biology; Ecology; Zoology; Phylogenetic tree; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001189763,0.00008146283,0.0001173374,0.000502205,0.0002366946,0.0002994818,0.0001055471,0.000117678,0.0004919938],"category_scores_gemma":[0.0002914706,0.00009173617,0.0001823078,0.0003261645,0.0001121361,0.0001279338,0.0002928907,0.0002024664,0.0000959173],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002368603,"about_ca_system_score_gemma":0.0001424593,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004459514,"about_ca_topic_score_gemma":0.01540081,"domain_scores_codex":[0.9999433,0.000006258638,0.000003438962,0.00002624682,0.000009460677,0.0000113462],"domain_scores_gemma":[0.9998178,0.00003514935,0.00006328325,0.00001298371,0.00002556575,0.00004518137],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002116155,0.00005365178,0.7802092,0.0000476305,0.0001262435,0.0002660109,0.001806975,0.0005784109,0.1981272,0.0003076096,0.0001957461,0.01806959],"study_design_scores_gemma":[0.00000181087,0.00002090199,0.9978693,0.000005336673,0.0000135872,0.0001295071,0.000168073,0.000598226,0.0007506144,0.00003983819,0.0004004424,0.000002527621],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996306,0.00004324771,0.00009145879,0.000009046366,4.928828e-7,6.935531e-7,0.0001012298,0.000001430542,0.0001218413],"genre_scores_gemma":[0.9987557,0.00005026533,0.0004044715,0.00001332055,0.000002027285,0.000002659122,0.0006341027,0.000003882558,0.0001336327],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004459514,"threshold_uncertainty_score":0.008867085,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02046120112973816,"score_gpt":0.2174442587489034,"score_spread":0.1969830576191652,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}