{"id":"W2133265651","doi":"10.1371/journal.ppat.1002861","title":"Exon Level Transcriptomic Profiling of HIV-1-Infected CD4+ T Cells Reveals Virus-Induced Genes and Host Environment Favorable for Viral Replication","year":2012,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":50,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre hospitalier universitaire de Québec; Université Laval","funders":"Canadian Institutes of Health Research; Université Laval","keywords":"Biology; Virus; Transcriptome; Viral replication; Virology; Gene; Population; Gene expression profiling; Genome; Host (biology); Genetics; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002877491,0.0001713434,0.0002834914,0.0000804767,0.0001520707,0.000006750487,0.00008913847,0.0001643099,0.00009543207],"category_scores_gemma":[0.00004022314,0.0001492924,0.00008413125,0.00004663329,0.00007885607,0.00009328324,0.00003432457,0.0001050169,0.0002329174],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000612333,"about_ca_system_score_gemma":0.00003159637,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002207944,"about_ca_topic_score_gemma":0.000003830185,"domain_scores_codex":[0.9987225,0.000147668,0.0002830786,0.0003278129,0.00004943059,0.0004695376],"domain_scores_gemma":[0.9993086,0.0001001229,0.0001117425,0.0003808888,0.00003801084,0.00006066303],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001444914,0.0005128469,0.01521167,0.00007422389,0.0001842256,7.252407e-7,0.0003775885,6.325876e-7,0.9815832,0.00006877691,0.00009666466,0.001745],"study_design_scores_gemma":[0.001206576,0.0003269869,0.01958084,0.00001943289,0.0001199988,0.000006516561,0.0000763655,0.000009311244,0.9774937,0.00001655805,0.001004974,0.0001387017],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935901,0.002187225,0.0007021981,0.0000537023,0.00007574103,0.001181528,0.002103362,0.00003161894,0.00007457189],"genre_scores_gemma":[0.9965637,0.0003462263,0.001726657,0.00001761267,0.00003241905,0.0002868233,0.0004987039,0.00002449476,0.0005033462],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004369181,"threshold_uncertainty_score":0.6087968,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05462610793129219,"score_gpt":0.2637900764302009,"score_spread":0.2091639684989087,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}