{"id":"W2133319829","doi":"10.1128/jb.01699-06","title":"The AppA and PpsR Proteins from <i>Rhodobacter sphaeroides</i> Can Establish a Redox-Dependent Signal Chain but Fail To Transmit Blue-Light Signals in Other Bacteria","year":2007,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Rhodobacter sphaeroides; Biology; Rhodobacter; Operon; Response regulator; Biochemistry; Mutant; Swarming motility; Cell biology; Gene; Photosynthesis; Quorum sensing","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002671199,0.0005272058,0.000360824,0.0002260676,0.0001723977,0.000367931,0.0002786833,0.0003152722,0.0004800455],"category_scores_gemma":[0.0003339285,0.0002265646,0.0003915049,0.0001903396,0.0002728345,0.0002759747,0.0002952227,0.0006585989,0.0004454347],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003364517,"about_ca_system_score_gemma":0.0002871381,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001872995,"about_ca_topic_score_gemma":0.001485925,"domain_scores_codex":[0.9996376,0.00007366086,0.00004345779,0.00005492239,0.0001218279,0.00006849642],"domain_scores_gemma":[0.9997696,0.00005364011,0.00005010003,0.0000459486,0.00002950607,0.00005114237],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003262667,0.00001125988,0.0001636963,0.00001300195,0.000002327434,0.00002295973,0.000007289163,0.00002040319,0.9994279,0.00003249277,0.000008666901,0.0002572873],"study_design_scores_gemma":[0.00001195393,0.0001665553,0.007603402,0.000005828852,0.0000183425,0.0004218746,0.00004459899,0.0006767119,0.9898496,0.00005691778,0.001137214,0.000007197864],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961374,0.0005330289,0.00220998,0.00008384637,0.00001783144,0.00002320668,0.0003433029,0.0000725596,0.0005788225],"genre_scores_gemma":[0.9925821,0.0002965844,0.00369456,0.0000588285,0.000006971318,0.0000386614,0.001736755,0.00005515495,0.001530306],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001872995,"threshold_uncertainty_score":0.003724217,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006454145897188675,"score_gpt":0.2208476417840764,"score_spread":0.2143934958868877,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}