{"id":"W2133672070","doi":"10.1128/jb.00579-08","title":"Biosynthesis of a Rare Di-N-Acetylated Sugar in the Lipopolysaccharides of both <i>Pseudomonas aeruginosa</i> and <i>Bordetella pertussis</i> Occurs via an Identical Scheme despite Different Gene Clusters","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Biotechnology and Biological Sciences Research Council; University of Oklahoma","keywords":"Bordetella pertussis; Biology; Pseudomonas aeruginosa; Gene cluster; Microbiology; Gene; Mutant; Biochemistry; Complementation; Dehydrogenase; Enzyme; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003652342,0.000241829,0.0006250094,0.0001695519,0.00005450413,0.00001168905,0.000470625,0.0004402871,0.00001080141],"category_scores_gemma":[0.0001197843,0.0001628613,0.0001739359,0.0001371852,0.0006312205,0.00001121077,0.000165129,0.0002396191,2.959867e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001246249,"about_ca_system_score_gemma":0.00008013434,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005332798,"about_ca_topic_score_gemma":0.00006145626,"domain_scores_codex":[0.9981173,0.0002950919,0.0008785034,0.0002707629,0.0001442539,0.0002940883],"domain_scores_gemma":[0.9987273,0.00006597841,0.0006124747,0.0003607143,0.0001386431,0.00009490212],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006525415,0.0002137518,0.02184738,0.00002649336,0.0001073791,0.00002835114,0.000195329,0.000004560752,0.9756289,0.000008965207,0.00003120024,0.001255168],"study_design_scores_gemma":[0.001216054,0.002588241,0.07549521,0.00004228171,0.00007261989,0.001383481,0.0001742871,0.00005660028,0.9180463,0.00003887572,0.0006670713,0.0002189764],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978397,0.001119228,0.0002147391,0.0004624438,0.0001835474,0.0001440823,0.00002734732,0.00000323434,0.000005599949],"genre_scores_gemma":[0.9948675,0.003563391,0.00118091,0.0002119584,0.0001331812,0.000003243451,0.00001592949,0.00001923736,0.000004649044],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05758258,"threshold_uncertainty_score":0.6641291,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0111335248911228,"score_gpt":0.2274716075333652,"score_spread":0.2163380826422424,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}