{"id":"W2133720547","doi":"10.1128/aem.03852-12","title":"Characterization of a Novel Panton-Valentine Leukocidin (PVL)-Encoding Staphylococcal Phage and Its Naturally PVL-Lacking Variant","year":2013,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"","keywords":"Leukocidin; Panton–Valentine leukocidin; Lytic cycle; Biology; Staphylococcus aureus; Prophage; Virulence; Gene; Frameshift mutation; Microbiology; Genetics; Integrase; Open reading frame; Genome; Bacteriophage; Virology; Virus; Exon; Peptide sequence; Bacteria; Methicillin-resistant Staphylococcus aureus; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000872092,0.0002715181,0.0002383944,0.0003021974,0.0001255504,0.0003827204,0.0001507131,0.0002511396,0.0004454946],"category_scores_gemma":[0.0002834923,0.000104904,0.0002517593,0.0001958402,0.0001939158,0.0001662885,0.0002939827,0.000356181,0.0002371794],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001544274,"about_ca_system_score_gemma":0.0001864507,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005391139,"about_ca_topic_score_gemma":0.0004996496,"domain_scores_codex":[0.9999245,0.000008340649,0.000006674969,0.00001822554,0.00002499923,0.00001722117],"domain_scores_gemma":[0.9997351,0.00007089215,0.00006200655,0.0000249017,0.00002847701,0.00007863069],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004199009,0.00002114215,0.001046342,0.00001514086,0.000003919291,0.0001928294,0.00003685024,0.00002403468,0.9978722,0.00002347194,0.000008084063,0.0007138965],"study_design_scores_gemma":[0.00004450675,0.001226686,0.1027757,0.00002094857,0.00007584743,0.006695102,0.0004992998,0.001768014,0.882296,0.0001088975,0.004454459,0.00003468907],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989877,0.000107194,0.0005912972,0.00002243652,0.000004672933,0.000008980013,0.0001316215,0.000008502746,0.0001376977],"genre_scores_gemma":[0.9959539,0.0001056002,0.00202368,0.00003032555,0.000006693812,0.00001335443,0.0009576135,0.00001434857,0.0008946175],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005391139,"threshold_uncertainty_score":0.001490295,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006598828628233462,"score_gpt":0.1835357422151925,"score_spread":0.176936913586959,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}