{"id":"W2133726081","doi":"10.1371/journal.pone.0016936","title":"Clonality and α-a Recombination in the Australian Cryptococcus gattii VGII Population - An Emerging Outbreak in Australia","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":82,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Centers for Disease Control and Prevention; Robert Koch Institut; National and Kapodistrian University of Athens; British Columbia Centre for Disease Control; Centre de Coopération Internationale en Recherche Agronomique pour le Développement; University of Sydney; Koninklijke Nederlandse Akademie van Wetenschappen","keywords":"Cryptococcus gattii; Outbreak; Population; Context (archaeology); Genotype; Multilocus sequence typing; Biology; Demography; Genetics; Virology; Cryptococcus; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003711583,0.00008426894,0.0001716928,0.000117813,0.00006313129,0.00001227508,0.00003442134,0.00005720617,0.0001076776],"category_scores_gemma":[0.00006453603,0.00006498398,0.00001870986,0.0002036995,0.00003043695,0.0001477607,0.00001370052,0.000181528,0.000007716803],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005125258,"about_ca_system_score_gemma":0.000005213619,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00531236,"about_ca_topic_score_gemma":0.002270669,"domain_scores_codex":[0.9992518,0.00008472438,0.0002189508,0.0001591452,0.0001431685,0.000142165],"domain_scores_gemma":[0.9997159,0.00002261101,0.00004463175,0.0001419683,0.00003880225,0.00003611773],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004292242,0.001371164,0.9923869,0.00007183738,0.00002793195,0.00000786922,0.003115967,6.409144e-7,0.001319078,0.001194511,0.00003161372,0.0004295754],"study_design_scores_gemma":[0.0005492734,0.0002235372,0.9955793,0.000124327,0.00005120911,0.000003388091,0.0005498588,0.00006893387,0.0004796663,0.002283939,0.00001484787,0.00007171404],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977273,0.0000173362,0.000001502567,0.0008231839,0.00003391525,0.0004178238,0.000002955446,0.00001975806,0.000956227],"genre_scores_gemma":[0.9990105,0.00002045885,0.0004521747,0.00006528149,0.00004262187,0.00005707331,0.00002464812,0.000006039115,0.0003212045],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003192416,"threshold_uncertainty_score":0.8030735,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2285215693055586,"score_gpt":0.3424626603686837,"score_spread":0.1139410910631251,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}