{"id":"W2133726081","doi":"10.1371/journal.pone.0016936","title":"Clonality and α-a Recombination in the Australian Cryptococcus gattii VGII Population - An Emerging Outbreak in Australia","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":82,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Centers for Disease Control and Prevention; Robert Koch Institut; National and Kapodistrian University of Athens; British Columbia Centre for Disease Control; Centre de Coopération Internationale en Recherche Agronomique pour le Développement; University of Sydney; Koninklijke Nederlandse Akademie van Wetenschappen","keywords":"Cryptococcus gattii; Outbreak; Population; Context (archaeology); Genotype; Multilocus sequence typing; Biology; Demography; Genetics; Virology; Cryptococcus; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007131603,0.0002113293,0.0002983772,0.001580415,0.0006725022,0.0008123236,0.000393436,0.0003973972,0.0005019744],"category_scores_gemma":[0.001159847,0.0001624324,0.0002201414,0.001549727,0.0006200139,0.000299887,0.0006089923,0.0003150237,0.00008307645],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000697421,"about_ca_system_score_gemma":0.0005046644,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01643186,"about_ca_topic_score_gemma":0.01542694,"domain_scores_codex":[0.9993477,0.0001026118,0.00005985832,0.0001960219,0.0001864415,0.0001073133],"domain_scores_gemma":[0.9988632,0.0001456428,0.0004032665,0.00006776833,0.0003741115,0.0001459117],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002296772,0.00008531454,0.9368935,0.0001026486,0.00004589944,0.00150483,0.00466486,0.0002043036,0.04337681,0.00007956923,0.00009982455,0.01271283],"study_design_scores_gemma":[0.000003210674,0.0001749471,0.9947979,0.00001932381,0.00002583964,0.001334605,0.00170268,0.0003738229,0.001085071,0.0000432126,0.0004311648,0.000008025723],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994524,0.00008826714,0.0001328569,0.00001264666,0.000001257283,0.00001624168,0.0000354503,0.000001547602,0.0002592365],"genre_scores_gemma":[0.9994042,0.0001016353,0.0002755837,0.00001315173,0.000002738472,0.000009036835,0.00007836516,9.327355e-7,0.0001143959],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01643186,"threshold_uncertainty_score":0.03267246,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2285215693055586,"score_gpt":0.3424626603686837,"score_spread":0.1139410910631251,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}