{"id":"W2133965413","doi":"10.1086/522006","title":"Prevalent Herpes Simplex Virus Type 2 Infection is Associated with Altered Vaginal Flora and an increased Susceptibility to Multiple Sexually Transmitted Infections","year":2007,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":131,"is_retracted":false,"has_abstract":true,"ca_institutions":"Mount Sinai Hospital; University of Manitoba; University of Toronto; University Health Network","funders":"Canadian Institutes of Health Research; European Commission","keywords":"Bacterial vaginosis; Chlamydia trachomatis; Trichomonas vaginalis; Vaginal flora; Neisseria gonorrhoeae; Gonorrhea; Incidence (geometry); Medicine; Rate ratio; Chlamydia; Immunology; Syphilis; Herpes simplex virus; Sexually transmitted disease; Virology; Internal medicine; Biology; Confidence interval; Virus; Gynecology; Microbiology; Human immunodeficiency virus (HIV)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001872572,0.0002806446,0.0004005638,0.0004677495,0.0006379863,0.00006334731,0.0001716059,0.0001529925,0.0003854514],"category_scores_gemma":[0.001705675,0.0001922527,0.0001062123,0.000824313,0.000390846,0.0004653983,0.00004931803,0.0005574988,0.00003344717],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002754494,"about_ca_system_score_gemma":0.000275572,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001917613,"about_ca_topic_score_gemma":0.004257751,"domain_scores_codex":[0.9974258,0.001062004,0.000556745,0.0003151082,0.0001819114,0.0004584322],"domain_scores_gemma":[0.9967331,0.001100617,0.0003470985,0.0004285368,0.001197814,0.0001928379],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.004099909,0.004322652,0.8712104,0.0000463581,0.001359277,0.00001322269,0.00155049,0.0005372795,0.09503678,0.00001399528,0.000844024,0.0209656],"study_design_scores_gemma":[0.002701496,0.006162106,0.9689027,0.00005737879,0.0004679517,0.0005354865,0.0001900308,0.00001391031,0.01823784,0.0001446248,0.002335345,0.0002511019],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963357,0.0004193065,0.001716185,0.000104301,0.0004520437,0.0006603632,0.00006810629,0.000116386,0.0001275856],"genre_scores_gemma":[0.9992986,0.0001505412,0.00001457162,0.0001530484,0.0002205321,0.00001058891,0.00002886317,0.0000334839,0.00008981404],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09769233,"threshold_uncertainty_score":0.7839838,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01946608447134219,"score_gpt":0.3131567933989844,"score_spread":0.2936907089276423,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}