{"id":"W2134168236","doi":"10.1128/jvi.79.24.15199-15208.2005","title":"The Papain-Like Protease from the Severe Acute Respiratory Syndrome Coronavirus Is a Deubiquitinating Enzyme","year":2005,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Ubiquitin and proteasome pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":386,"is_retracted":false,"has_abstract":true,"ca_institutions":"Biotechnology Research Institute","funders":"Canada's Michael Smith Genome Sciences Centre","keywords":"Deubiquitinating enzyme; Ubiquitin; Protease; Biology; Proteases; Biochemistry; Enzyme; Proteolysis; Papain; Coronavirus; Molecular biology; Coronavirus disease 2019 (COVID-19); Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001049295,0.0001889501,0.0002285602,0.0000264247,0.0003411071,0.00004808893,0.0006348105,0.000221948,0.0001069927],"category_scores_gemma":[0.0002126632,0.0001113877,0.0002023495,0.00006180671,0.0002089099,0.00001118754,0.0001834668,0.0004790458,0.00003526035],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003011563,"about_ca_system_score_gemma":0.0001958865,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001242029,"about_ca_topic_score_gemma":0.00004061615,"domain_scores_codex":[0.9982352,0.0004447286,0.0005151065,0.0002173888,0.0002326323,0.0003548888],"domain_scores_gemma":[0.9986053,0.0001805103,0.0005400073,0.0004058566,0.0001502713,0.0001180653],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001191189,0.000148204,0.003077134,0.000009681496,0.0007322426,0.0002618335,0.0007080647,0.00007280006,0.9273977,0.0001587671,0.02578473,0.04045761],"study_design_scores_gemma":[0.001583426,0.001782879,0.006001707,0.00003506639,0.0001266369,0.00202344,0.0001983245,0.00006102752,0.1650431,0.000600361,0.8222802,0.0002638807],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9881276,0.005959875,0.0002214314,0.004770096,0.0002587446,0.0002504937,0.00006056905,0.00000673743,0.0003444895],"genre_scores_gemma":[0.9846361,0.0002999769,0.0005389972,0.0130259,0.001063931,0.00002558605,0.000006200429,0.00002767936,0.000375572],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7964955,"threshold_uncertainty_score":0.4542257,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01968827171767492,"score_gpt":0.2731914676445722,"score_spread":0.2535031959268973,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}