{"id":"W2134273787","doi":"10.1196/annals.1355.006","title":"New Perspectives on Rickettsial Evolution from New Genome Sequences of <i>Rickettsia</i>, particularly <i>R. canadensis</i>, and <i>Orientia tsutsugamushi</i>","year":2005,"lang":"en","type":"review","venue":"Annals of the New York Academy of Sciences","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Synteny; Orientia tsutsugamushi; Anaplasmataceae; Genome; Genetics; Rickettsia; Phylogenetics; Comparative genomics; Phylogenetic tree; Rickettsiales; Ehrlichia chaffeensis; Gene; Evolutionary biology; Genomics; Scrub typhus; Polymerase chain reaction; Virus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008795246,0.0005525724,0.0006619226,0.001106319,0.0002760763,0.001224651,0.0005019722,0.0006173042,0.001334884],"category_scores_gemma":[0.0005652897,0.0002931629,0.000625358,0.001444302,0.0006259597,0.003542184,0.0006206654,0.001522843,0.000352925],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000602761,"about_ca_system_score_gemma":0.0005731821,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001940967,"about_ca_topic_score_gemma":0.003073378,"domain_scores_codex":[0.9998289,0.00003367981,0.00002008663,0.00005281999,0.00003303355,0.00003140249],"domain_scores_gemma":[0.9994268,0.0002297608,0.00008912487,0.00004765504,0.0001061416,0.0001004516],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001330735,0.0001257476,0.02886917,0.008007192,0.0005701752,0.004954937,0.005317875,0.003574572,0.6152522,0.01643504,0.004179949,0.3113824],"study_design_scores_gemma":[0.0001088447,0.00127504,0.3597282,0.002209721,0.001174078,0.008131334,0.01210267,0.005276393,0.05575809,0.04386406,0.509999,0.0003725182],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"review","genre_scores_codex":[0.5972468,0.3543797,0.02129271,0.01071633,0.0007913965,0.00003839172,0.002231587,0.0005231263,0.01277988],"genre_scores_gemma":[0.6372098,0.3053726,0.03763509,0.003965449,0.001555169,0.00004227275,0.01063196,0.0002007427,0.003386972],"genre_candidate":"review","genre_consensus":null,"teacher_disagreement_score":0.001940967,"threshold_uncertainty_score":0.004651427,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06654151084789281,"score_gpt":0.3250766144265862,"score_spread":0.2585351035786934,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}