{"id":"W2134420054","doi":"10.1128/genomea.00909-14","title":"Draft Genome Sequence of Uncultivated <i>Firmicutes</i> ( <i>Peptococcaceae</i> SCADC) Single Cells Sorted from Methanogenic Alkane-Degrading Cultures","year":2014,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Genome Alberta; Genome Canada","keywords":"Alkane; Biology; Whole genome sequencing; Firmicutes; Bacteria; Illumina dye sequencing; Gene; Genome; Microbiology; Genetics; Biochemistry; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000284792,0.000436902,0.000475674,0.00007647249,0.0002105031,0.00004570924,0.0005822706,0.000213296,0.00004111643],"category_scores_gemma":[0.00004338838,0.0004133077,0.0002122505,0.0002527292,0.00020841,0.000004913466,0.0003448184,0.0001200935,0.0000390629],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005270163,"about_ca_system_score_gemma":0.00006684278,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001701775,"about_ca_topic_score_gemma":0.00003373056,"domain_scores_codex":[0.9975637,0.0001290365,0.000595525,0.0007995832,0.000313541,0.0005985791],"domain_scores_gemma":[0.9985009,0.00002900269,0.0003581065,0.0006802311,0.0002758061,0.0001558938],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000653702,0.0001396148,0.001641064,0.00002527933,0.0004538172,0.000001725442,0.0003109305,0.0003796501,0.996488,0.000009600504,0.0002339064,0.0002510185],"study_design_scores_gemma":[0.0009408979,0.0004342824,0.001715144,0.00002144816,0.0001011867,0.000003232,0.0001189535,0.00002683304,0.7657625,0.0001571209,0.2302495,0.000468915],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922095,0.003133077,0.001068722,0.0000508681,0.000406722,0.0005445682,0.001324899,0.00001775322,0.0012439],"genre_scores_gemma":[0.9926621,0.0008145072,0.002902963,0.0005886846,0.0003374189,0.00005456839,0.001749359,0.00005792265,0.0008324386],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2307255,"threshold_uncertainty_score":0.9998319,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01950371616056709,"score_gpt":0.2442458154911046,"score_spread":0.2247420993305375,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}