{"id":"W2134476478","doi":"10.1093/infdis/jis411","title":"Genetic Diversity as a Marker for Timing Infection in HIV-Infected Patients: Evaluation of a 6-Month Window and Comparison With BED","year":2012,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":60,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control; Public Health Agency of Canada; University of Ottawa","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Human immunodeficiency virus (HIV); Biology; Cutoff; Genetic diversity; Internal medicine; Immunology; Medicine; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003086537,0.0003138569,0.000573071,0.00157509,0.0002609695,0.0005905497,0.0003423905,0.0005030384,0.0006473134],"category_scores_gemma":[0.006154712,0.0001858844,0.0002693166,0.0006952272,0.0002486351,0.0004591323,0.000496144,0.0004883577,0.0001895324],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002926097,"about_ca_system_score_gemma":0.0001671671,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008353271,"about_ca_topic_score_gemma":0.001208828,"domain_scores_codex":[0.9988179,0.0005263796,0.0001118237,0.0002210513,0.0002338384,0.00008899847],"domain_scores_gemma":[0.9958126,0.001924584,0.001010868,0.0002579563,0.0004329976,0.0005610065],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001045016,0.00004757641,0.9925512,0.00001556007,0.00006567749,0.00002967108,0.00006246148,0.0002335871,0.001151358,0.000017188,0.00005840396,0.00472222],"study_design_scores_gemma":[0.00001686008,0.001022069,0.9874508,0.000009823873,0.00006389289,0.0003834954,0.0001321068,0.009458571,0.001184514,0.00004752185,0.0002184694,0.00001187986],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987489,0.0002412593,0.0006011682,0.00001782048,0.000007800827,0.00001286352,0.0001518629,0.00001314989,0.0002049686],"genre_scores_gemma":[0.9984056,0.0000464345,0.001218863,0.0000122459,0.00001169729,0.0000111719,0.0002354629,0.000003469944,0.00005509293],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003086537,"threshold_uncertainty_score":0.01632339,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02034742752492334,"score_gpt":0.284227585349937,"score_spread":0.2638801578250137,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}