{"id":"W2134518387","doi":"10.1128/jvi.75.21.10543-10549.2001","title":"Role of Stem B, Loop B, and Nucleotides next to the Primer Binding Site and the Kissing-Loop Domain in Human Immunodeficiency Virus Type 1 Replication and Genomic-RNA Dimerization","year":2001,"lang":"en","type":"article","venue":"Journal of Virology","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Jewish General Hospital","funders":"","keywords":"Biology; Stem-loop; RNA; Genome; Primer binding site; Viral replication; Base pair; Genetics; Molecular biology; Origin of replication; Virology; Reverse transcriptase; Virus; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002778177,0.0003114996,0.0003024874,0.0001798821,0.0002562758,0.0003217827,0.0002315943,0.0004459422,0.0007135505],"category_scores_gemma":[0.0003862607,0.0001777087,0.0002152423,0.00009892041,0.0002613263,0.0003218898,0.0001946655,0.0003362435,0.0003241344],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001842917,"about_ca_system_score_gemma":0.0003667447,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004470735,"about_ca_topic_score_gemma":0.0004022188,"domain_scores_codex":[0.9998288,0.00005099164,0.00001468555,0.00004275804,0.00004058784,0.0000220879],"domain_scores_gemma":[0.9996269,0.0001126368,0.00008228384,0.00003022435,0.0000275088,0.0001203501],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000223359,0.00003208874,0.001233074,0.00002542465,0.000005916492,0.00008813501,0.00001841714,0.0004311228,0.9954981,0.0001991587,0.00001157435,0.002233756],"study_design_scores_gemma":[0.00003615306,0.0006314914,0.00758191,0.00001063954,0.0000276515,0.0005277487,0.00003981508,0.007897884,0.981577,0.0003792273,0.001270768,0.00001972751],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955254,0.0004160129,0.003497548,0.00002038796,0.000006505299,0.0000107173,0.0000366139,0.00007181182,0.0004149049],"genre_scores_gemma":[0.9970751,0.00006378766,0.002585097,0.00002122684,0.000001702958,0.000006292525,0.00006373579,0.000009043692,0.000174076],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007135505,"threshold_uncertainty_score":0.002387106,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01192603591785592,"score_gpt":0.2457539723815904,"score_spread":0.2338279364637345,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}