{"id":"W2134559590","doi":"10.1128/iai.01305-12","title":"Chlamydia trachomatis Plasmid-Encoded Pgp4 Is a Transcriptional Regulator of Virulence-Associated Genes","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":170,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; University of California, Irvine; National Institutes of Health; Wellcome Trust","keywords":"Biology; Plasmid; ORFS; Chlamydia trachomatis; Chlamydiae; Gene; Virulence; Genetics; Mutant; Open reading frame; Microbiology; Virology; Peptide sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000108222,0.0005233398,0.0002846978,0.0003419447,0.0002499028,0.0002959427,0.0001800929,0.0002287842,0.001029653],"category_scores_gemma":[0.0001962479,0.0001393913,0.0003015107,0.0003055671,0.0003215248,0.0001674553,0.0004603188,0.0004351255,0.0003751722],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004609002,"about_ca_system_score_gemma":0.0006438154,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001297335,"about_ca_topic_score_gemma":0.001066675,"domain_scores_codex":[0.9998826,0.00001434755,0.000006424204,0.00002880969,0.00004277208,0.00002500769],"domain_scores_gemma":[0.9998838,0.00002576202,0.00003281696,0.00001541716,0.00001942145,0.00002279086],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005561006,0.00001738285,0.001028193,0.00003933897,0.000003491086,0.00007017606,0.00001189124,0.00008156745,0.9968145,0.00009682524,0.00007381603,0.001707259],"study_design_scores_gemma":[0.00002277562,0.0002562815,0.04291925,0.00002339366,0.00003142092,0.0007782491,0.0000844926,0.002899066,0.9457393,0.000334655,0.006895648,0.00001551778],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9855325,0.001592057,0.008907228,0.0001975459,0.00004293662,0.0000321529,0.00186815,0.0003627577,0.001464803],"genre_scores_gemma":[0.9853923,0.000806156,0.007333071,0.00006099702,0.00001291571,0.00004484177,0.002796253,0.00004602071,0.003507375],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001297335,"threshold_uncertainty_score":0.003444493,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02052667137527011,"score_gpt":0.2589823493053136,"score_spread":0.2384556779300435,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}