{"id":"W2134651243","doi":"10.1093/molbev/msq310","title":"Origin and Evolution of a Novel DnaA-Like Plasmid Replication Type in Rhodobacterales","year":2010,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":46,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"","keywords":"Biology; Replicon; Plasmid; DnaA; Roseobacter; Genetics; Extrachromosomal DNA; Origin of replication; Genome; Gene; Phylogenetic tree; Clade","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002507645,0.00007236837,0.0001095234,0.00004650556,0.00007292617,0.000001941375,0.00007974951,0.0002155524,0.0000850279],"category_scores_gemma":[0.00007188949,0.0000707501,0.00001332362,0.0001215176,0.000395431,0.0000527065,0.0001063533,0.0002010888,0.00001037221],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003708959,"about_ca_system_score_gemma":0.00001187225,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009501406,"about_ca_topic_score_gemma":0.002452025,"domain_scores_codex":[0.9994036,0.0001080331,0.0001301973,0.0002131443,0.0000194947,0.0001255196],"domain_scores_gemma":[0.999656,0.00003832664,0.00006213086,0.0002081254,0.000009584556,0.00002585334],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006116031,0.00004652785,0.2041815,0.000003712322,0.000003450461,1.960512e-7,0.00004851334,0.00003125489,0.7884476,0.006945816,0.00004514171,0.0001851253],"study_design_scores_gemma":[0.0003905991,0.000163305,0.9834882,0.00000525378,0.000008116261,0.00002205079,0.00001637683,0.001049463,0.004455027,0.008993092,0.001308186,0.0001003303],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974568,0.00008140143,0.00181196,0.0001613517,0.0001158929,0.000103691,0.000005339927,0.000009186975,0.0002543202],"genre_scores_gemma":[0.9987386,0.00002113742,0.00109688,0.00006669034,0.00000784111,0.000005083087,0.00004180049,0.000003223793,0.00001870936],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7839925,"threshold_uncertainty_score":0.2885105,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009445069390295604,"score_gpt":0.2588350328825615,"score_spread":0.2493899634922659,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}