{"id":"W2134651243","doi":"10.1093/molbev/msq310","title":"Origin and Evolution of a Novel DnaA-Like Plasmid Replication Type in Rhodobacterales","year":2010,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":46,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"","keywords":"Biology; Replicon; Plasmid; DnaA; Roseobacter; Genetics; Extrachromosomal DNA; Origin of replication; Genome; Gene; Phylogenetic tree; Clade","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002839554,0.0003565661,0.000512132,0.001419826,0.0003549833,0.0007564029,0.0003595904,0.0005663489,0.0004992373],"category_scores_gemma":[0.0007505146,0.0003701764,0.0006148712,0.0008358652,0.0003231209,0.000369631,0.0005732307,0.0004307675,0.0009019395],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003198342,"about_ca_system_score_gemma":0.0003683259,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001117094,"about_ca_topic_score_gemma":0.0009300285,"domain_scores_codex":[0.9996099,0.00004051542,0.00003592206,0.0001872258,0.0000746053,0.00005192082],"domain_scores_gemma":[0.9990452,0.0001415751,0.0002971941,0.000202939,0.0001387444,0.0001744309],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002147139,0.00007200551,0.02632115,0.0001886657,0.00003150593,0.0002674294,0.0002581109,0.0001740291,0.9598993,0.0001886096,0.00003275855,0.0123518],"study_design_scores_gemma":[0.0000584314,0.001071921,0.802428,0.0001256702,0.0002247681,0.006483737,0.0007713058,0.003813977,0.1767036,0.0006788029,0.007521435,0.0001183905],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953113,0.001079531,0.0020853,0.00004933486,0.000006449588,0.00003087709,0.00070472,0.00009112415,0.0006414486],"genre_scores_gemma":[0.9902874,0.0005019367,0.005999,0.00004249726,0.0000160541,0.00004792051,0.002199409,0.00004654077,0.000859165],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001419826,"threshold_uncertainty_score":0.002320588,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009445069390295604,"score_gpt":0.2588350328825615,"score_spread":0.2493899634922659,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}