{"id":"W2134926247","doi":"10.1139/b09-093","title":"Inference of phylogenetic relationships among the subfamilies of grasses (Poaceae: Poales) using meso-scale exemplar-based sampling of the plastid genome","year":2010,"lang":"en","type":"article","venue":"Botany","topic":"Plant Taxonomy and Phylogenetics","field":"Agricultural and Biological Sciences","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Clade; Phylogenetic tree; Poaceae; Phylogenetics; Phylogenomics; Genome; Sister group; Evolutionary biology; Botany; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002788201,0.0001120833,0.0001801575,0.00001089678,0.0002114913,0.00001138642,0.0004069039,0.0001026668,0.00004592073],"category_scores_gemma":[0.0001477106,0.00003824351,0.00009576142,0.0002894149,0.0003325669,0.00002823963,0.0000711653,0.0001932081,8.427964e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004689175,"about_ca_system_score_gemma":0.00003114942,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002135051,"about_ca_topic_score_gemma":0.004973166,"domain_scores_codex":[0.99909,0.0001176519,0.0003115709,0.00014067,0.0001832567,0.0001568592],"domain_scores_gemma":[0.9985943,0.000847533,0.000296344,0.0001365283,0.00009061508,0.00003464544],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000005748545,0.00001979088,0.463299,0.000005837078,0.000004842446,5.298363e-8,0.0000306884,0.000295453,0.5361613,0.00005351548,0.000001142746,0.0001226376],"study_design_scores_gemma":[0.00005451937,0.00004075844,0.939384,0.00002978208,0.0000277623,0.000001721531,0.0001971141,0.0002333098,0.0595181,0.0002480524,0.0001859473,0.00007893997],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990998,0.0001707163,0.00005965672,0.00006071329,0.00008821292,0.0001872285,0.0001691784,0.000005564455,0.0001589639],"genre_scores_gemma":[0.9991674,0.00001460434,0.0007447619,0.00001023051,0.00004381501,0.000004508419,0.000003544431,0.000001019344,0.00001009787],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4766432,"threshold_uncertainty_score":0.2775143,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05934197207586351,"score_gpt":0.2324707812001217,"score_spread":0.1731288091242582,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}