{"id":"W2134932724","doi":"10.1111/j.1365-2699.2011.02643.x","title":"A protocol for temporal calibration of general area cladograms","year":2011,"lang":"en","type":"article","venue":"Journal of Biogeography","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Cladogram; Vicariance; Molecular clock; Neogene; Clade; Biogeography; Taxon; Paleontology; Biology; Ecology; Phylogenetic tree; Evolutionary biology; Geography; Structural basin","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002494672,0.00007438887,0.0001810359,0.0002054915,0.00006383444,0.000007240494,0.0001111823,0.00005645265,0.0002488253],"category_scores_gemma":[0.0000163721,0.00004965056,0.0002219974,0.0002019589,0.0001282544,0.0001408958,0.000002577489,0.00006377776,7.310305e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":6.384303e-7,"about_ca_system_score_gemma":0.00002873174,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004122013,"about_ca_topic_score_gemma":0.002641546,"domain_scores_codex":[0.9992748,0.00004287755,0.0003662653,0.00006610308,0.0001264249,0.0001235631],"domain_scores_gemma":[0.9992945,0.00003404408,0.0004094781,0.00005790832,0.0001400393,0.00006398508],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003158545,0.00004262578,0.9952637,0.00002120287,0.00006783917,0.000002356684,0.0001623093,0.000006370482,0.00002760565,0.00005679228,0.001880736,0.002152619],"study_design_scores_gemma":[0.0008748509,0.001209081,0.9860379,0.00002574096,0.00002800682,0.00002343901,0.000136599,0.0004463925,0.0003073561,0.001721896,0.00911058,0.0000781754],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.823069,0.00165795,0.01977461,0.00115868,0.00225232,0.1127073,0.0005407653,0.00009383881,0.03874549],"genre_scores_gemma":[0.9757911,0.00001412774,0.02302521,0.0001507381,0.0001855457,0.0007843912,0.00001408219,0.000002704146,0.00003207916],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1527221,"threshold_uncertainty_score":0.2724462,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07056332771267156,"score_gpt":0.2767236310132774,"score_spread":0.2061603033006059,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}