{"id":"W2135016101","doi":"10.1086/653485","title":"Persistent<i>Pneumocystis</i>Colonization Leads to the Development of Chronic Obstructive Pulmonary Disease in a Nonhuman Primate Model of AIDS","year":2010,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":97,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"National Heart, Lung, and Blood Institute","keywords":"COPD; Immunology; Pneumocystis carinii; Bronchoalveolar lavage; Subclinical infection; Pneumocystis pneumonia; Simian immunodeficiency virus; Disease; Medicine; Respiratory disease; Immunopathology; Lung; Proinflammatory cytokine; Biology; Virus; Inflammation; Virology; Pathology; Pneumocystis jirovecii; Human immunodeficiency virus (HIV); Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002969512,0.000185645,0.0003762273,0.0002813368,0.0001490594,0.00001093547,0.0001859446,0.00004520777,0.00002602294],"category_scores_gemma":[0.0002338669,0.0001088227,0.000221288,0.0003536473,0.0001393385,0.0001082885,0.00006810447,0.0002864803,0.000004677563],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003245314,"about_ca_system_score_gemma":0.0007472842,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000158713,"about_ca_topic_score_gemma":0.0001388284,"domain_scores_codex":[0.9984475,0.00009745463,0.0006801938,0.0001304362,0.0004447127,0.0001996362],"domain_scores_gemma":[0.9984946,0.0001180613,0.0005079492,0.00030284,0.0003415548,0.0002350012],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003357668,0.00388135,0.552875,0.0005427023,0.0005999468,0.00008628164,0.004879196,0.09563212,0.3226849,0.0001893019,0.00003300892,0.01523856],"study_design_scores_gemma":[0.002429834,0.001308583,0.9706943,0.000389848,0.001223664,0.0004152558,0.0003177995,0.008994362,0.0136321,0.0003116717,0.00007332984,0.0002092404],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977387,0.0003522581,0.0006594251,0.0003132368,0.0002385074,0.000508012,0.00002736845,0.00001527777,0.0001472687],"genre_scores_gemma":[0.999552,0.00005187176,0.0001359319,0.00006564286,0.00009290879,0.00002436638,0.000004363834,0.00002214245,0.00005081191],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4178194,"threshold_uncertainty_score":0.443766,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01002916527183262,"score_gpt":0.2525442992138084,"score_spread":0.2425151339419758,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}