{"id":"W2135016101","doi":"10.1086/653485","title":"Persistent<i>Pneumocystis</i>Colonization Leads to the Development of Chronic Obstructive Pulmonary Disease in a Nonhuman Primate Model of AIDS","year":2010,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":97,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"National Heart, Lung, and Blood Institute","keywords":"COPD; Immunology; Pneumocystis carinii; Bronchoalveolar lavage; Subclinical infection; Pneumocystis pneumonia; Simian immunodeficiency virus; Disease; Medicine; Respiratory disease; Immunopathology; Lung; Proinflammatory cytokine; Biology; Virus; Inflammation; Virology; Pathology; Pneumocystis jirovecii; Human immunodeficiency virus (HIV); Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004258789,0.0006118083,0.000352891,0.0004798401,0.0006142313,0.0006244081,0.0003039678,0.0007481224,0.002163321],"category_scores_gemma":[0.0002036795,0.0002719751,0.000287746,0.0001912321,0.0007372768,0.0003667294,0.0003258919,0.001371554,0.0004941805],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004033964,"about_ca_system_score_gemma":0.0003235182,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009186618,"about_ca_topic_score_gemma":0.001342191,"domain_scores_codex":[0.9996395,0.0001314628,0.00001965566,0.00006033074,0.00005799306,0.00009104554],"domain_scores_gemma":[0.9997877,0.0000439733,0.00003919961,0.00004121431,0.00001393351,0.00007388821],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002163029,0.001297887,0.00183908,0.0001783989,0.00003627984,0.001235686,0.0003252689,0.0002680904,0.9842277,0.001085459,0.0006638048,0.006679321],"study_design_scores_gemma":[0.000699607,0.02240497,0.02543765,0.0002098574,0.0001700174,0.009733756,0.0007232602,0.007022966,0.8984239,0.002442878,0.03267607,0.00005509028],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9914005,0.002814879,0.0009357373,0.0004161138,0.00005726174,0.00006400705,0.0002398939,0.00007327885,0.00399833],"genre_scores_gemma":[0.9931591,0.001549825,0.001630033,0.0001922841,0.0000312264,0.0001523954,0.0003931475,0.0000180056,0.002873884],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002163321,"threshold_uncertainty_score":0.007237017,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01002916527183262,"score_gpt":0.2525442992138084,"score_spread":0.2425151339419758,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}