{"id":"W2135052838","doi":"10.1128/ec.00195-06","title":"The <i>Tetrahymena thermophila</i> Phagosome Proteome","year":2006,"lang":"en","type":"article","venue":"Eukaryotic Cell","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":76,"is_retracted":false,"has_abstract":true,"ca_institutions":"York University","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada; Canadian Institutes of Health Research; Eli Lilly Canada; Eli Lilly and Company; National Science Foundation","keywords":"Phagosome; Tetrahymena; Phagocytosis; Biology; Proteome; Cell biology; Proteomics; Biochemistry; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001003669,0.0003157965,0.0002566949,0.0002879707,0.0003500931,0.0003534976,0.0001550354,0.0003119064,0.0006660025],"category_scores_gemma":[0.0001353592,0.0001380795,0.0003482977,0.0003713375,0.0001591829,0.0003267229,0.0002128993,0.0002916046,0.0004144334],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003293621,"about_ca_system_score_gemma":0.0003273548,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0014441,"about_ca_topic_score_gemma":0.001684982,"domain_scores_codex":[0.9999408,0.00000491737,0.000004138267,0.00002172764,0.00001661285,0.0000118574],"domain_scores_gemma":[0.999923,0.000009750568,0.00002396608,0.000009697718,0.00001413941,0.00001939476],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006628402,0.0000052027,0.0005925851,0.00004980624,0.000005060676,0.00004895305,0.00002941201,0.00002787038,0.9976504,0.00005418438,0.0001082212,0.001361985],"study_design_scores_gemma":[0.00002649931,0.0002372839,0.2110363,0.00006338621,0.00009785686,0.001632298,0.0002864763,0.002154909,0.7655163,0.0004955941,0.01842241,0.0000307054],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9851903,0.003484571,0.003767138,0.000195499,0.00003372642,0.00003416826,0.005604426,0.000106565,0.00158363],"genre_scores_gemma":[0.957999,0.003094081,0.01544692,0.0002772823,0.00003202535,0.00006746512,0.01878202,0.0001057467,0.004195403],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0014441,"threshold_uncertainty_score":0.002871394,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.002518085273853851,"score_gpt":0.1704126148134074,"score_spread":0.1678945295395536,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}