{"id":"W2135052838","doi":"10.1128/ec.00195-06","title":"The <i>Tetrahymena thermophila</i> Phagosome Proteome","year":2006,"lang":"en","type":"article","venue":"Eukaryotic Cell","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":76,"is_retracted":false,"has_abstract":true,"ca_institutions":"York University","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada; Canadian Institutes of Health Research; Eli Lilly Canada; Eli Lilly and Company; National Science Foundation","keywords":"Phagosome; Tetrahymena; Phagocytosis; Biology; Proteome; Cell biology; Proteomics; Biochemistry; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00008998727,0.0001206874,0.00007467311,0.000008976179,0.0004136764,0.0001077076,0.0002531348,0.00003534051,0.003023719],"category_scores_gemma":[0.000004070233,0.00008116924,0.00007178606,0.0001262319,0.0002067163,0.0001352348,0.00008153589,0.0001363403,0.003516114],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005703475,"about_ca_system_score_gemma":0.000008129779,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003918575,"about_ca_topic_score_gemma":0.0001253222,"domain_scores_codex":[0.9991945,0.00002927493,0.00016886,0.0002046569,0.0001044161,0.0002983159],"domain_scores_gemma":[0.9995595,0.00005047684,0.00006126831,0.0002753184,0.000004018214,0.00004944094],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001615997,0.0002268726,0.01367575,0.000007474592,0.000006650781,0.00002323967,0.0001465294,0.0002626531,0.9329462,0.0001658077,0.04956094,0.002961724],"study_design_scores_gemma":[0.0003267424,0.00006618875,0.7660144,0.000007390168,0.00001727884,0.00003194284,0.00003513428,0.00008247473,0.08574313,0.001135435,0.1462814,0.0002585085],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8139414,0.000171427,0.0001371761,0.0006638826,0.0004688562,0.000302329,0.000006171907,0.00005516493,0.1842535],"genre_scores_gemma":[0.9526713,0.00001077901,0.000173496,0.0001529571,0.0001311636,0.00001645982,0.000005309365,0.00001659762,0.04682194],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8472031,"threshold_uncertainty_score":0.9978877,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.002518085273853851,"score_gpt":0.1704126148134074,"score_spread":0.1678945295395536,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}