{"id":"W2135150083","doi":"10.1111/j.1365-313x.2007.03233.x","title":"Molecular phenotyping of lignin‐modified tobacco reveals associated changes in cell‐wall metabolism, primary metabolism, stress metabolism and photorespiration","year":2007,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":184,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Monolignol; Cinnamyl-alcohol dehydrogenase; Coniferyl alcohol; Phenylpropanoid; Metabolome; Biochemistry; Secondary metabolism; Nicotiana tabacum; Biology; Metabolomics; Metabolic pathway; Photorespiration; Lignin; Transcriptome; Metabolism; Metabolite; Chemistry; Biosynthesis; Gene expression; Enzyme; Gene; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002085063,0.0002556194,0.0005019644,0.0002602285,0.0001336623,0.00005782174,0.0003863683,0.0002098643,0.000009513059],"category_scores_gemma":[0.0001602042,0.0001884286,0.0001370257,0.0002514217,0.00006580946,0.0000159239,0.0001479316,0.00032851,0.000001037493],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002197211,"about_ca_system_score_gemma":0.0000746232,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005971128,"about_ca_topic_score_gemma":0.0002631909,"domain_scores_codex":[0.997894,0.0003979553,0.0005806633,0.0002952168,0.0004083974,0.0004237869],"domain_scores_gemma":[0.9987375,0.00008267682,0.0006008033,0.0002937794,0.0001410478,0.0001441592],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002270651,0.00008845887,0.0007697006,0.00001218505,0.0001976358,0.00002648286,0.0002787874,0.0003386655,0.9964784,0.00005440578,0.0007640876,0.0007641526],"study_design_scores_gemma":[0.00115515,0.00002732861,0.01840037,0.00006562004,0.0002690856,0.00005829142,0.000194317,0.0001947032,0.9760783,0.00009546,0.003204777,0.0002565595],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9904394,0.007577721,0.0006090711,0.0001644256,0.0001571199,0.0001928847,0.0001651118,0.000008654464,0.0006856155],"genre_scores_gemma":[0.9964706,0.002043404,0.000285108,0.0006473782,0.0002291586,0.000006404201,0.0001857339,0.00002627702,0.0001058848],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02040004,"threshold_uncertainty_score":0.7683895,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01270594374012567,"score_gpt":0.2322517946936026,"score_spread":0.2195458509534769,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}