{"id":"W2135378750","doi":"10.1093/molbev/msr205","title":"Phylogenetic Analysis Based on Spectral Methods","year":2011,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Phylogenetic tree; Covariance; Biology; Similarity (geometry); Clade; Tree (set theory); Categorical variable; Pattern recognition (psychology); Computational biology; Statistics; Mathematics; Artificial intelligence; Computer science; Gene; Genetics; Combinatorics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005108737,0.0008086359,0.001017711,0.005126946,0.001188174,0.001622103,0.001295619,0.001047181,0.002925146],"category_scores_gemma":[0.02170321,0.0004614745,0.001355906,0.003262958,0.00123956,0.002583095,0.002006467,0.002049598,0.001220423],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009499111,"about_ca_system_score_gemma":0.001067442,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001214662,"about_ca_topic_score_gemma":0.001008143,"domain_scores_codex":[0.9962233,0.002480869,0.0001627258,0.0004144334,0.0006103477,0.0001083746],"domain_scores_gemma":[0.9918251,0.005506073,0.0006356411,0.001037896,0.0008286237,0.0001667288],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0001824478,0.0001757287,0.004227072,0.0003930413,0.0003752421,0.0001499914,0.0004691477,0.3539438,0.009171098,0.2875969,0.002533538,0.3407821],"study_design_scores_gemma":[0.00001727207,0.00003681084,0.0008027107,0.00004527785,0.00002377938,0.0001002778,0.00005363788,0.8404804,0.001149139,0.1538599,0.003398478,0.00003229943],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.003534279,0.0001182817,0.9954315,0.00004076404,0.0000202761,0.0000331634,0.00005078825,0.000215977,0.0005548653],"genre_scores_gemma":[0.1041523,0.0003756335,0.8938192,0.00007153826,0.00007179983,0.0002479951,0.0003426482,0.0002021962,0.0007166658],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.005126946,"threshold_uncertainty_score":0.02701795,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01392479161715415,"score_gpt":0.2870867929857431,"score_spread":0.273162001368589,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}