{"id":"W2135521893","doi":"10.1172/jci45235","title":"Comparative transcriptomics of extreme phenotypes of human HIV-1 infection and SIV infection in sooty mangabey and rhesus macaque","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Investigation","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":185,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Canadian Institutes of Health Research; China Scholarship Council; Ragon Institute of MGH, MIT and Harvard; Centre Hospitalier Universitaire Vaudois; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Biology; Transcriptome; Immunology; Virology; Simian immunodeficiency virus; Immunodeficiency; Viral load; Rhesus macaque; Macaque; Gene; Immune system; Genetics; Virus; Gene expression","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007036668,0.00007999766,0.0004157028,0.0001586505,0.00003749372,0.000003621029,0.00003421884,0.0001671582,0.00003736879],"category_scores_gemma":[0.0001927769,0.00006414254,0.00006907558,0.00008386058,0.0004866177,0.000163569,0.0000135116,0.0003296783,0.000004018768],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001750425,"about_ca_system_score_gemma":0.00006502816,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004580005,"about_ca_topic_score_gemma":0.0004602322,"domain_scores_codex":[0.9984769,0.0004217505,0.0008675309,0.00009790476,0.0000435194,0.00009242973],"domain_scores_gemma":[0.9989564,0.0002114161,0.0005708574,0.00005967429,0.0001561073,0.00004549795],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004748318,0.0003311859,0.8897311,0.00005308893,0.0001793704,0.000002410801,0.001825172,0.000005947081,0.104223,0.0005613544,0.0001014396,0.002511154],"study_design_scores_gemma":[0.002417159,0.001422789,0.9348392,0.0001085563,0.00006386702,0.00001949235,0.00006673199,0.00002476165,0.05814222,0.0027763,0.00006861691,0.00005032141],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989591,0.0003548682,0.0001702513,0.0000569342,0.000121683,0.0001228824,0.000009148396,0.000003263967,0.0002018653],"genre_scores_gemma":[0.9990258,0.0005757058,0.0003141442,0.00001457452,0.00002129573,0.000001997385,0.00001568925,0.000003723069,0.00002706461],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04608075,"threshold_uncertainty_score":0.2615657,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2028058756644565,"score_gpt":0.3829761279462368,"score_spread":0.1801702522817803,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}