{"id":"W2135598172","doi":"10.1101/gr.217802","title":"Control Genes and Variability: Absence of Ubiquitous Reference Transcripts in Diverse Mammalian Expression Studies","year":2002,"lang":"en","type":"article","venue":"Genome Research","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":378,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill Genome Centre; McGill University Health Centre","funders":"Takeda Oncology; Mitacs; Canadian Institutes of Health Research; Bristol-Myers Squibb","keywords":"Biology; Housekeeping gene; Gene; Microarray; Gene expression; Microarray analysis techniques; Genetics; Gene expression profiling; Computational biology; Reference genes; Phenotype; DNA microarray","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007623829,0.00008820318,0.0001470026,0.0001135835,0.00008076797,0.00001183064,0.0001848225,0.0001037633,0.00005512703],"category_scores_gemma":[0.0001278519,0.000076324,0.0000242985,0.0001705925,0.0002780138,0.000005533494,0.0001023438,0.0001277167,0.00000489398],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002345885,"about_ca_system_score_gemma":0.0000288479,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002812519,"about_ca_topic_score_gemma":0.00002645822,"domain_scores_codex":[0.9986574,0.0002720558,0.0001983675,0.0003712478,0.0002509681,0.0002499603],"domain_scores_gemma":[0.9993096,0.00003653055,0.00004030774,0.0003385701,0.0002014815,0.00007350926],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008102434,0.00005836738,0.003293221,0.00007230443,0.000009883771,0.000002294156,0.00037271,0.00001288038,0.9901646,0.0000689833,0.0003714962,0.005492213],"study_design_scores_gemma":[0.003041512,0.0008763015,0.06630449,0.0001469534,0.00001331044,0.0000101862,0.004406113,0.0002581466,0.8622676,0.0009665425,0.06126997,0.0004388725],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9885306,0.009696269,0.0003959564,0.0003133986,0.00004677868,0.000290939,0.00002056767,0.000004683953,0.0007008194],"genre_scores_gemma":[0.9937988,0.005474958,0.000180762,0.00002209116,0.00005074546,0.00006022916,0.000006739951,0.000007747168,0.00039795],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.127897,"threshold_uncertainty_score":0.3112403,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1415979883306038,"score_gpt":0.3668231029196328,"score_spread":0.225225114589029,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}