{"id":"W2135650498","doi":"10.1371/journal.pntd.0003404","title":"Genome and Phylogenetic Analyses of Trypanosoma evansi Reveal Extensive Similarity to T. brucei and Multiple Independent Origins for Dyskinetoplasty","year":2015,"lang":"en","type":"article","venue":"PLoS neglected tropical diseases","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":139,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research","funders":"National Institute of Allergy and Infectious Diseases; National Natural Science Foundation of China; University of Bristol; Wellcome Trust; Medical Research Council; Canadian Institute for Advanced Research; Fundação Oswaldo Cruz; University of Dundee; National Institutes of Health; National Science Foundation","keywords":"Trypanosoma evansi; Biology; Trypanosoma brucei; Genetics; Mitochondrial DNA; Genome; Phylogenetic tree; Kinetoplast; Phylogenetics; Gene; DNA; Virology; Trypanosomiasis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000001038217,0.000197533,0.0004776515,0.0001896037,0.00008829797,0.00003324623,0.0000979148,0.0000871305,0.00002295942],"category_scores_gemma":[0.002842699,0.0001623421,0.00008748899,0.0003401739,0.0001940886,0.00006169535,0.0001084442,0.000132136,0.000004733166],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009909007,"about_ca_system_score_gemma":0.0002430342,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004985453,"about_ca_topic_score_gemma":0.00004815278,"domain_scores_codex":[0.9983759,0.00006893197,0.0003175583,0.0004490345,0.0004153152,0.0003732604],"domain_scores_gemma":[0.9974687,0.0003183781,0.00006469304,0.0003353755,0.0006737034,0.001139121],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001263538,0.0006003628,0.04046091,0.0001823063,0.0002175784,0.00001569253,0.00007705971,0.00001261789,0.9560448,0.00008909181,0.0004198925,0.00061614],"study_design_scores_gemma":[0.002808053,0.001431184,0.9846124,0.00004862899,0.0003693684,0.00001883633,0.00007996109,0.0004820536,0.00881651,0.0002940099,0.0008859574,0.0001530253],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947458,0.001496127,0.0006563878,0.0009979692,0.00002201674,0.001227287,0.0007650182,0.00005066845,0.00003871193],"genre_scores_gemma":[0.9972126,0.0001134809,0.001946255,0.0002582811,0.0001504597,0.0001083522,0.0001187581,0.00002460884,0.00006724232],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9472283,"threshold_uncertainty_score":0.6620119,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0782547087687005,"score_gpt":0.3464839889430796,"score_spread":0.2682292801743791,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}