{"id":"W2135650498","doi":"10.1371/journal.pntd.0003404","title":"Genome and Phylogenetic Analyses of Trypanosoma evansi Reveal Extensive Similarity to T. brucei and Multiple Independent Origins for Dyskinetoplasty","year":2015,"lang":"en","type":"article","venue":"PLoS neglected tropical diseases","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":139,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research","funders":"National Institute of Allergy and Infectious Diseases; National Natural Science Foundation of China; University of Bristol; Wellcome Trust; Medical Research Council; Canadian Institute for Advanced Research; Fundação Oswaldo Cruz; University of Dundee; National Institutes of Health; National Science Foundation","keywords":"Trypanosoma evansi; Biology; Trypanosoma brucei; Genetics; Mitochondrial DNA; Genome; Phylogenetic tree; Kinetoplast; Phylogenetics; Gene; DNA; Virology; Trypanosomiasis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006593314,0.0001673632,0.0001662256,0.0006765885,0.0002237329,0.0002210804,0.0001018887,0.0001837651,0.0008138085],"category_scores_gemma":[0.000283859,0.00006141055,0.0001849201,0.0007204981,0.0001232483,0.000150923,0.0001970194,0.0002269397,0.0002376054],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001556617,"about_ca_system_score_gemma":0.0001679324,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002010125,"about_ca_topic_score_gemma":0.003514526,"domain_scores_codex":[0.9999408,0.000005051599,0.000006305352,0.00001803033,0.00001772256,0.0000121128],"domain_scores_gemma":[0.9998199,0.00003361302,0.00006394295,0.00001125034,0.00003753596,0.00003380513],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004038541,0.00004797819,0.043398,0.0002435841,0.00004738171,0.0008124722,0.0004082969,0.0002163503,0.9391454,0.0003160905,0.0001492836,0.01481137],"study_design_scores_gemma":[0.00003507824,0.0003347932,0.9319963,0.00005988234,0.0001470263,0.002929969,0.0006337528,0.002835894,0.04995705,0.000571643,0.01047432,0.00002429829],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961866,0.0008944071,0.0009056939,0.00004616193,0.000004131461,0.00001080709,0.001126875,0.00002118325,0.0008040798],"genre_scores_gemma":[0.9896187,0.0007017242,0.002854177,0.00005686132,0.000008322101,0.00001988371,0.006057017,0.00001540999,0.0006678116],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002010125,"threshold_uncertainty_score":0.003996789,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0782547087687005,"score_gpt":0.3464839889430796,"score_spread":0.2682292801743791,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}