{"id":"W2136023064","doi":"10.1128/jvi.03330-14","title":"<i>N</i> -Linked Glycosylation Protects Gammaretroviruses against Deamination by APOBEC3 Proteins","year":2014,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"Canadian Institutes of Health Research","keywords":"Biology; Cytidine deaminase; Gammaretrovirus; Genome; Glycosylation; Genetics; Endogenous retrovirus; Viral replication; APOBEC3G; DNA; Virology; Retrovirus; Virus; Cell biology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001256207,0.0002084726,0.0001179169,0.00007371474,0.00008843075,0.0002274722,0.0002045194,0.0002056347,0.001046239],"category_scores_gemma":[0.0001461722,0.00004830168,0.0001566256,0.00007735031,0.0001631405,0.0001331863,0.000151217,0.0002984887,0.0002841975],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002131152,"about_ca_system_score_gemma":0.0001290379,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006439556,"about_ca_topic_score_gemma":0.000545776,"domain_scores_codex":[0.9999117,0.00001463104,0.000007299058,0.00001957208,0.00002014013,0.00002669976],"domain_scores_gemma":[0.9998802,0.00002058251,0.00004046667,0.00001884652,0.00001796251,0.00002190387],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008935331,0.00001244324,0.0005077043,0.00001984619,0.000004544795,0.00001569825,0.000004391477,0.00002869721,0.9976273,0.00004216829,0.00001918689,0.001628773],"study_design_scores_gemma":[0.00000820792,0.0004541888,0.01510244,0.0000104744,0.00001662352,0.0003050149,0.00002254711,0.0007271749,0.9812515,0.00004839088,0.002048682,0.000004766798],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950204,0.001760994,0.001576477,0.00006041644,0.00001365151,0.000009732947,0.000118185,0.00007153143,0.0013686],"genre_scores_gemma":[0.9981073,0.000320696,0.000747542,0.00005025268,0.000006168186,0.000005831651,0.0001390116,0.0000105913,0.0006125002],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001046239,"threshold_uncertainty_score":0.003500044,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00810595260825291,"score_gpt":0.1977227181564598,"score_spread":0.1896167655482068,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}