{"id":"W2136023064","doi":"10.1128/jvi.03330-14","title":"<i>N</i> -Linked Glycosylation Protects Gammaretroviruses against Deamination by APOBEC3 Proteins","year":2014,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"Canadian Institutes of Health Research","keywords":"Biology; Cytidine deaminase; Gammaretrovirus; Genome; Glycosylation; Genetics; Endogenous retrovirus; Viral replication; APOBEC3G; DNA; Virology; Retrovirus; Virus; Cell biology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000352932,0.00009027886,0.0001661994,0.0000204452,0.0001191558,0.00002631147,0.0001589699,0.0001174928,0.0001039497],"category_scores_gemma":[0.0002333978,0.00003646776,0.00008009974,0.0001490022,0.00003527002,0.0001124238,0.00002363731,0.0001480301,0.0000186303],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002522022,"about_ca_system_score_gemma":0.00001146336,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002490737,"about_ca_topic_score_gemma":0.0001271208,"domain_scores_codex":[0.9990466,0.0001694348,0.0003250022,0.0001147254,0.0001889293,0.0001553283],"domain_scores_gemma":[0.9992359,0.0001423429,0.0003718975,0.00003446836,0.0001426717,0.00007273119],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004182282,0.00008887598,0.001820453,0.000002708075,0.00001006913,0.000001224836,0.00002772269,0.00004108284,0.9128869,0.0001327494,0.0002643867,0.08468206],"study_design_scores_gemma":[0.001952823,0.007813132,0.4877328,0.00006290543,0.0000768648,0.0001507307,0.0000665505,0.003049539,0.1583126,0.01255201,0.3276946,0.0005355383],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955859,0.00008588457,0.0008615017,0.002738612,0.0001424702,0.0001780478,0.00000937737,0.00001478303,0.0003833958],"genre_scores_gemma":[0.9983979,0.00003327013,0.0004569703,0.000555698,0.0004745871,0.000008720473,0.00001743134,9.599195e-7,0.00005449127],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7545743,"threshold_uncertainty_score":0.1487112,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00810595260825291,"score_gpt":0.1977227181564598,"score_spread":0.1896167655482068,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}