{"id":"W2136046332","doi":"10.1038/sj.emboj.7600336","title":"A complex network of RNA–RNA interactions controls subgenomic mRNA transcription in a tombusvirus","year":2004,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":68,"is_retracted":false,"has_abstract":false,"ca_institutions":"York University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Subgenomic mRNA; RNA; Transcription (linguistics); Messenger RNA; RNA silencing; RNA editing; Genetics; Molecular biology; Virology; Computational biology; Gene; RNA interference","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005717641,0.00008869764,0.0001956625,0.0000152794,0.000301148,0.00005468477,0.0002864144,0.00002177086,0.0002410622],"category_scores_gemma":[0.00003920275,0.00002842338,0.0001105522,0.0002392827,0.00008653165,0.0001227364,0.00003216192,0.0003505374,0.00001878708],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009111822,"about_ca_system_score_gemma":0.00001830243,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005188005,"about_ca_topic_score_gemma":0.003035863,"domain_scores_codex":[0.998954,0.0001580846,0.0002917445,0.00008775689,0.0002084185,0.0003000087],"domain_scores_gemma":[0.9995068,0.0002136044,0.0001239769,0.0000325064,0.00006054236,0.00006259521],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001779679,0.00006674695,0.0002584263,0.00000155809,0.00003925088,0.0000137709,0.0002844272,0.001121744,0.9831308,0.0001935502,0.0007883116,0.01392342],"study_design_scores_gemma":[0.005011976,0.001638088,0.8185115,0.0005948301,0.0001203014,0.001137771,0.00300576,0.001663956,0.02964822,0.05413546,0.08375719,0.0007749442],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941035,0.0005827807,0.00002898528,0.004232012,0.0001151048,0.000152482,0.00003978544,0.000009553419,0.0007358229],"genre_scores_gemma":[0.9986025,0.0007393281,0.00005656779,0.0001621388,0.0003550682,0.000005911703,0.000004849089,6.654921e-7,0.00007294099],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9534826,"threshold_uncertainty_score":0.2639462,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06995068575171634,"score_gpt":0.2875086457545368,"score_spread":0.2175579600028205,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}