{"id":"W2136125842","doi":"10.1128/iai.71.9.5087-5096.2003","title":"A Novel Pathogenicity Island Integrated Adjacent to the <i>thrW</i> tRNA Gene of Avian Pathogenic <i>Escherichia coli</i> Encodes a Vacuolating Autotransporter Toxin","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":132,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Pathogenicity island; Pathogenic Escherichia coli; Microbiology; Virulence; Peptide sequence; Bacterial outer membrane; Escherichia coli; Open reading frame; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006027506,0.0001773905,0.0001817948,0.00003471766,0.0002139356,0.00002652561,0.0001038587,0.0001428036,0.00004481091],"category_scores_gemma":[0.000124725,0.0001331213,0.0001110973,0.0001789112,0.00004612233,0.000007464126,0.00003607765,0.0001524617,0.000002789583],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001272238,"about_ca_system_score_gemma":0.00006799724,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004747076,"about_ca_topic_score_gemma":0.0006711042,"domain_scores_codex":[0.9989461,0.0002577869,0.0002809971,0.0002213865,0.00009959988,0.0001941091],"domain_scores_gemma":[0.9993595,0.00002031288,0.000116402,0.0003262137,0.0001003926,0.00007715188],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007098571,0.0001144983,0.002442359,0.00001371411,0.00004523779,4.216586e-7,0.0002977865,0.0000422642,0.9940323,0.00004179112,0.00003096472,0.002867688],"study_design_scores_gemma":[0.0004967951,0.0003502063,0.01646421,0.00002843566,0.00003788389,0.000028043,0.00009427019,0.00004965695,0.9689048,0.00004369157,0.01331271,0.0001893162],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.932657,0.0003510545,0.06597864,0.00004507463,0.0001478708,0.0003365386,0.00006923638,0.00001400393,0.0004005845],"genre_scores_gemma":[0.9971889,0.0002692389,0.001873728,0.0004357466,0.00003676775,0.00004491452,0.0000326005,0.00001749062,0.0001005999],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06453191,"threshold_uncertainty_score":0.5428528,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01189052353448718,"score_gpt":0.2227657245711059,"score_spread":0.2108752010366187,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}