{"id":"W2136125842","doi":"10.1128/iai.71.9.5087-5096.2003","title":"A Novel Pathogenicity Island Integrated Adjacent to the <i>thrW</i> tRNA Gene of Avian Pathogenic <i>Escherichia coli</i> Encodes a Vacuolating Autotransporter Toxin","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":132,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Pathogenicity island; Pathogenic Escherichia coli; Microbiology; Virulence; Peptide sequence; Bacterial outer membrane; Escherichia coli; Open reading frame; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003277898,0.0003180526,0.0001234287,0.0001156249,0.0001327322,0.000190629,0.0001465261,0.0002363759,0.0004024662],"category_scores_gemma":[0.00008078193,0.0001045669,0.0001968769,0.00009649498,0.0001376355,0.00009027669,0.0001463979,0.0003792567,0.0002845464],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001694087,"about_ca_system_score_gemma":0.0001723864,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005486393,"about_ca_topic_score_gemma":0.000710558,"domain_scores_codex":[0.9999518,0.000004649522,0.00000337923,0.00001142892,0.00001541867,0.00001331652],"domain_scores_gemma":[0.9998816,0.00001475568,0.00004363087,0.0000100864,0.00001241647,0.00003747207],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002683185,0.0000118122,0.0006840753,0.00001624666,0.000002714383,0.0002902221,0.000009217805,0.00002496041,0.9977882,0.00004329267,0.00002687088,0.001075481],"study_design_scores_gemma":[0.00004592752,0.001040514,0.06014638,0.00002489505,0.00005405183,0.008856051,0.0001155363,0.002020147,0.9163138,0.0001217999,0.01123665,0.00002434064],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941342,0.0004021655,0.004475517,0.00006326058,0.00003305793,0.0000213286,0.0001606759,0.00006272233,0.000646999],"genre_scores_gemma":[0.9902629,0.0002773229,0.006122517,0.00007892547,0.00002598648,0.00002023503,0.001440625,0.00002281197,0.001748725],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005486393,"threshold_uncertainty_score":0.001346409,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01189052353448718,"score_gpt":0.2227657245711059,"score_spread":0.2108752010366187,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}