{"id":"W2136180457","doi":"10.1093/bioinformatics/btr023","title":"PhyloPro: a web-based tool for the generation and visualization of phylogenetic profiles across Eukarya","year":2011,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research; Hospital for Sick Children","keywords":"Phylogenetic tree; Visualization; Computer science; Web application; World Wide Web; Data science; Computational biology; Data mining; Biology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002084092,0.002222154,0.00153645,0.005906962,0.001335298,0.002073124,0.002423861,0.001513087,0.04580921],"category_scores_gemma":[0.004337186,0.001610248,0.001523295,0.003272841,0.0007543801,0.002986564,0.003456589,0.00298044,0.0168046],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005304587,"about_ca_system_score_gemma":0.001142269,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001507594,"about_ca_topic_score_gemma":0.00187244,"domain_scores_codex":[0.99932,0.000141618,0.00007940019,0.0001564775,0.0002338404,0.00006861868],"domain_scores_gemma":[0.9980405,0.0009962269,0.0002322592,0.0002500114,0.0002134766,0.0002675736],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002520229,0.0003477385,0.006536726,0.00691808,0.0006218497,0.002562271,0.001645954,0.007225498,0.1332844,0.0138212,0.4374799,0.3870361],"study_design_scores_gemma":[0.0009856262,0.0003549656,0.01543304,0.001260843,0.0003250412,0.005041976,0.0004933838,0.08330774,0.09089034,0.03246148,0.7688562,0.0005894807],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.006638151,0.0009128681,0.5947519,0.0004134538,0.0002226228,0.0002137139,0.05074478,0.3423533,0.003749284],"genre_scores_gemma":[0.04986229,0.001829886,0.7785106,0.0005955086,0.0001326789,0.001400803,0.1130503,0.0488129,0.005804944],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.04580921,"threshold_uncertainty_score":0.1532471,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02921189388724127,"score_gpt":0.2650650657588872,"score_spread":0.235853171871646,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}