{"id":"W2136180457","doi":"10.1093/bioinformatics/btr023","title":"PhyloPro: a web-based tool for the generation and visualization of phylogenetic profiles across Eukarya","year":2011,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research; Hospital for Sick Children","keywords":"Phylogenetic tree; Visualization; Computer science; Web application; World Wide Web; Data science; Computational biology; Data mining; Biology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001888931,0.0001113933,0.0001030594,0.00001704648,0.0001339132,0.00001687842,0.000104905,0.0000729555,0.000002546417],"category_scores_gemma":[0.00005106357,0.00008048231,0.00005074064,0.00004947434,0.0001077165,0.000001511439,0.00006059727,0.0000173442,7.458708e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000003484404,"about_ca_system_score_gemma":0.00004880188,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004979247,"about_ca_topic_score_gemma":0.00001455563,"domain_scores_codex":[0.9994036,0.00001252633,0.0002641974,0.0001032432,0.00007021974,0.0001462231],"domain_scores_gemma":[0.9994837,0.00001733677,0.0001443725,0.0002041747,0.0001293395,0.00002105176],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001549393,0.0001013123,0.02943346,0.0003531156,0.0001882114,1.111918e-7,0.002801821,0.0003098353,0.9395008,0.0008057627,0.001287723,0.02506292],"study_design_scores_gemma":[0.001660765,0.0008856521,0.04474095,0.00001749514,0.00008967803,0.000004436409,0.0005748068,0.08282028,0.8595548,0.0000958193,0.009208015,0.0003473109],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9726521,0.0008711391,0.02553513,0.00001944797,0.0001060595,0.0005739042,0.0001045381,0.000003468059,0.000134207],"genre_scores_gemma":[0.9853561,0.0002764955,0.01395038,0.0001293755,0.00009395919,0.00008945789,0.00006033343,0.00001243453,0.00003145965],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08251045,"threshold_uncertainty_score":0.3281973,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02921189388724127,"score_gpt":0.2650650657588872,"score_spread":0.235853171871646,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}