{"id":"W2136211131","doi":"10.1128/genomea.00598-13","title":"The Draft Genome Sequence of Sphingomonas paucimobilis Strain HER1398 ( <i>Proteobacteria</i> ), Host to the Giant PAU Phage, Indicates That It Is a Member of the Genus <i>Sphingobacterium</i> ( <i>Bacteroidetes</i> )","year":2013,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research; University of British Columbia","funders":"","keywords":"Sphingomonas paucimobilis; Biology; Sphingomonas; Strain (injury); Whole genome sequencing; Microbiology; Proteobacteria; Bacteroidetes; Host (biology); Genome; 16S ribosomal RNA; Genetics; Bacteria; Gene; Anatomy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002111458,0.000964481,0.0006803277,0.0008237087,0.0005493679,0.0005935698,0.0003600001,0.0005205473,0.002921457],"category_scores_gemma":[0.001204991,0.0002544864,0.0007599986,0.001944939,0.0001940332,0.0005294772,0.0004849598,0.0008257318,0.001560441],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005000698,"about_ca_system_score_gemma":0.001213154,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004060816,"about_ca_topic_score_gemma":0.003085915,"domain_scores_codex":[0.9998668,0.00001214602,0.00001583719,0.00003873195,0.00004433962,0.0000220997],"domain_scores_gemma":[0.9995143,0.00009866247,0.0001308455,0.00003935338,0.0001153579,0.0001014321],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001185306,0.0001133731,0.006057976,0.0008253064,0.00004512099,0.00095051,0.0003022822,0.0005075731,0.9686544,0.0003734685,0.001638826,0.01934574],"study_design_scores_gemma":[0.0003921768,0.002176671,0.3526853,0.0004722045,0.001065435,0.006704499,0.00229915,0.006991418,0.438462,0.002452023,0.1860158,0.0002833339],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8194842,0.002037714,0.0233589,0.0009452504,0.000420915,0.0003824823,0.1449319,0.001120184,0.007318398],"genre_scores_gemma":[0.3989564,0.003084596,0.06593183,0.0002580429,0.0001310025,0.0003336567,0.5234892,0.0003571667,0.007458169],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004060816,"threshold_uncertainty_score":0.009773254,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02032183255158593,"score_gpt":0.2381439791636187,"score_spread":0.2178221466120328,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}