{"id":"W2136211131","doi":"10.1128/genomea.00598-13","title":"The Draft Genome Sequence of Sphingomonas paucimobilis Strain HER1398 ( <i>Proteobacteria</i> ), Host to the Giant PAU Phage, Indicates That It Is a Member of the Genus <i>Sphingobacterium</i> ( <i>Bacteroidetes</i> )","year":2013,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research; University of British Columbia","funders":"","keywords":"Sphingomonas paucimobilis; Biology; Sphingomonas; Strain (injury); Whole genome sequencing; Microbiology; Proteobacteria; Bacteroidetes; Host (biology); Genome; 16S ribosomal RNA; Genetics; Bacteria; Gene; Anatomy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006249183,0.0004318295,0.000381589,0.00003462552,0.0004982279,0.000128235,0.001545046,0.0001435873,0.00007806699],"category_scores_gemma":[0.00006308372,0.0002446322,0.0002550802,0.0002779242,0.0004460442,0.000009873712,0.001026982,0.0001806478,0.00004004651],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004525179,"about_ca_system_score_gemma":0.0001512277,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004136371,"about_ca_topic_score_gemma":0.0001860961,"domain_scores_codex":[0.997376,0.0001520757,0.0006972039,0.000616984,0.0004648734,0.0006928897],"domain_scores_gemma":[0.9975868,0.00005107428,0.0005764592,0.001346289,0.0003071576,0.0001322334],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004233315,0.00006925441,0.003687457,0.00003764442,0.000306842,7.424526e-7,0.001353311,0.00002460739,0.9916102,0.00000408767,0.00176907,0.001094504],"study_design_scores_gemma":[0.0005209672,0.0003909408,0.06926405,0.00003801133,0.00007786817,0.00001344531,0.0007335247,0.000005048017,0.3106142,0.00006958692,0.6178508,0.0004214857],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9887519,0.001911639,0.00002588019,0.004367881,0.0003780823,0.001721426,0.002307008,0.000005178713,0.0005310383],"genre_scores_gemma":[0.9920737,0.001476381,0.0001902424,0.00446197,0.0001931109,0.0003474403,0.0001316764,0.00004939201,0.001076094],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6809959,"threshold_uncertainty_score":0.9975809,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02032183255158593,"score_gpt":0.2381439791636187,"score_spread":0.2178221466120328,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}