{"id":"W2136300375","doi":"10.1128/jb.00726-12","title":"Complete Genome Sequences of Methylophaga sp. Strain JAM1 and Methylophaga sp. Strain JAM7","year":2012,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies; Université Laval","keywords":"Biology; Strain (injury); Denitrifying bacteria; Genome; Whole genome sequencing; Gene; Genetics; Denitrification; Microbiology; Nitrogen; Anatomy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004546389,0.001422874,0.001231921,0.00271102,0.0007441325,0.0007388481,0.00089139,0.001197918,0.003165476],"category_scores_gemma":[0.001227883,0.0005521305,0.001082339,0.002896344,0.0003028498,0.0006374099,0.0008282338,0.001295987,0.002758296],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004207733,"about_ca_system_score_gemma":0.001475259,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003068063,"about_ca_topic_score_gemma":0.003741259,"domain_scores_codex":[0.9996585,0.00003710809,0.0000362493,0.00006857622,0.0001207927,0.00007884122],"domain_scores_gemma":[0.9989206,0.0002731883,0.0002564181,0.00008813062,0.0002718824,0.0001899557],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00249638,0.0002057549,0.004400175,0.002754389,0.000161254,0.0005119072,0.0005813767,0.0008883822,0.9575438,0.0004856398,0.002725155,0.0272456],"study_design_scores_gemma":[0.0006179606,0.001770655,0.4755867,0.001021788,0.0028895,0.003994771,0.001892747,0.00528718,0.273619,0.002129299,0.2307429,0.0004475179],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7042456,0.01237439,0.01231769,0.0005255574,0.000247414,0.0003300649,0.2641173,0.0008553062,0.00498665],"genre_scores_gemma":[0.167241,0.004998251,0.02293255,0.0001583032,0.0000785222,0.0003597061,0.8006886,0.0003430494,0.00320004],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003165476,"threshold_uncertainty_score":0.0105896,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0260271779272231,"score_gpt":0.2650884531194534,"score_spread":0.2390612751922304,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}