{"id":"W2136306215","doi":"10.1093/infdis/jis279","title":"Illness Severity in Community-Onset Invasive Staphylococcus aureus Infection and the Presence of Virulence Genes","year":2012,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre","funders":"Royal Perth Hospital Medical Research Foundation","keywords":"Virulence; Genotype; Staphylococcus aureus; Panton–Valentine leukocidin; Multilocus sequence typing; Microbiology; Leukocidin; Biology; Bacterial adhesin; Staphylococcal infections; Methicillin-resistant Staphylococcus aureus; Enterotoxin; clone (Java method); Virology; Medicine; Gene; Bacteria; Genetics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001625486,0.0001652255,0.0004463756,0.0001639426,0.0002837244,0.00001934685,0.0002033484,0.00006273666,0.00001971338],"category_scores_gemma":[0.002190603,0.000091004,0.0001424782,0.0003785774,0.001006388,0.0003044285,0.0001267963,0.0006065001,0.000001781771],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009185955,"about_ca_system_score_gemma":0.0001977128,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001268009,"about_ca_topic_score_gemma":0.0005535234,"domain_scores_codex":[0.9976487,0.001229091,0.0005070329,0.00006293871,0.0003067817,0.0002455172],"domain_scores_gemma":[0.9962885,0.002276922,0.0005909319,0.0003602267,0.0003446928,0.0001386754],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002075292,0.0005949502,0.9853511,0.0002792366,0.0001352112,0.000007457206,0.003875851,0.000148689,0.005387385,0.0000719538,0.0003690138,0.001703877],"study_design_scores_gemma":[0.002712426,0.0002943939,0.986326,0.0005052631,0.0004133525,0.0002551011,0.001536442,0.00001788992,0.006713494,0.0009441978,0.0001553159,0.0001260744],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932818,0.005473927,0.0001831345,0.0002123614,0.0002269763,0.0004348248,0.00002561046,0.00001272862,0.0001486551],"genre_scores_gemma":[0.994388,0.005203378,0.00001465573,0.0002238014,0.0001354191,0.000008946836,0.000001247456,0.00001376807,0.00001072073],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002339409,"threshold_uncertainty_score":0.3711036,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01240467346786359,"score_gpt":0.2724284447767119,"score_spread":0.2600237713088482,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}