{"id":"W2136580188","doi":"10.1111/nph.12815","title":"Genome‐wide association implicates numerous genes underlying ecological trait variation in natural populations of <i>Populus trichocarpa</i>","year":2014,"lang":"en","type":"article","venue":"New Phytologist","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":202,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria; University of British Columbia","funders":"Genome British Columbia; U.S. Department of Energy","keywords":"Biology; Populus trichocarpa; Genome-wide association study; Candidate gene; Quantitative trait locus; Genetic association; Single-nucleotide polymorphism; Genetics; Trait; Association mapping; Genetic architecture; Genetic variation; Phenotypic trait; Gene; Evolutionary biology; Genome; Phenotype; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003860399,0.0002853043,0.0002497351,0.0005601349,0.0002520507,0.0003761008,0.0002905742,0.000231901,0.0009638366],"category_scores_gemma":[0.0004888463,0.0001480197,0.0003183514,0.0005475388,0.000447276,0.000119395,0.0003254331,0.0002752899,0.0001261711],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002186928,"about_ca_system_score_gemma":0.0001915445,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002247207,"about_ca_topic_score_gemma":0.005733032,"domain_scores_codex":[0.9997066,0.00004807979,0.00001803138,0.000160178,0.00003721605,0.000029975],"domain_scores_gemma":[0.9993861,0.0002250274,0.0002318124,0.00005433142,0.00003513886,0.00006759798],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005911707,0.000084281,0.4410793,0.0001365182,0.000606228,0.001105576,0.0004392035,0.0007007638,0.5409997,0.0003532399,0.0002426742,0.01366132],"study_design_scores_gemma":[0.00001735862,0.00005146928,0.9932837,0.000004638584,0.00009897848,0.0004596069,0.00007685139,0.0008840646,0.00444554,0.000182674,0.0004849118,0.00001013108],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988824,0.000129408,0.0005279185,0.00003413317,0.000001845245,0.000003078027,0.0002110644,0.00002390951,0.0001863934],"genre_scores_gemma":[0.9985796,0.00008123086,0.0007930947,0.00004419665,0.000005352991,0.000008282806,0.000345931,0.0000112508,0.0001310979],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002247207,"threshold_uncertainty_score":0.004468262,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02465969232004958,"score_gpt":0.272280235668748,"score_spread":0.2476205433486985,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}