{"id":"W2136583745","doi":"10.1128/mcb.01748-08","title":"Genome-Wide Mapping of Boundary Element-Associated Factor (BEAF) Binding Sites in <i>Drosophila melanogaster</i> Links BEAF to Transcription","year":2009,"lang":"en","type":"article","venue":"Molecular and Cellular Biology","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":110,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Biology; Chromatin immunoprecipitation; Genetics; Chromatin; Histone; Gene; Transcription (linguistics); RNA polymerase II; Molecular biology; Promoter; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001973608,0.0002364503,0.0003145008,0.0001557577,0.00006824188,0.00002509907,0.00019178,0.0003948622,0.000008690487],"category_scores_gemma":[0.00003829583,0.0002515602,0.0001168632,0.0001623126,0.00006097021,0.000004149261,0.00007647379,0.0001710546,0.000002683938],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003177896,"about_ca_system_score_gemma":0.00003881812,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001291071,"about_ca_topic_score_gemma":0.00003304549,"domain_scores_codex":[0.998545,0.000106952,0.0004180995,0.0004579743,0.00008202394,0.0003899585],"domain_scores_gemma":[0.9994554,0.000008700671,0.0001266416,0.0002555093,0.0000512079,0.0001025721],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003434465,0.00008078944,0.01439893,0.00001904949,0.0000518345,0.00001050177,0.000191459,0.00006383572,0.9843131,0.00006606177,0.00000585573,0.0007642112],"study_design_scores_gemma":[0.001481942,0.001364662,0.03755152,0.00004193085,0.00003657638,0.000009638793,0.0001606697,0.0002088407,0.9539,0.0006531794,0.00405231,0.0005387578],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9913235,0.001496786,0.006252935,0.0002801747,0.00007073097,0.0002927513,0.00008574126,0.00001050381,0.0001868543],"genre_scores_gemma":[0.9975066,0.00016392,0.0005812699,0.0006339062,0.00003532233,0.000009421675,0.001003425,0.00002227948,0.00004386672],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03041315,"threshold_uncertainty_score":0.9999937,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008174058770720203,"score_gpt":0.2121728673203475,"score_spread":0.2039988085496273,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}