{"id":"W2136583745","doi":"10.1128/mcb.01748-08","title":"Genome-Wide Mapping of Boundary Element-Associated Factor (BEAF) Binding Sites in <i>Drosophila melanogaster</i> Links BEAF to Transcription","year":2009,"lang":"en","type":"article","venue":"Molecular and Cellular Biology","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":110,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Biology; Chromatin immunoprecipitation; Genetics; Chromatin; Histone; Gene; Transcription (linguistics); RNA polymerase II; Molecular biology; Promoter; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005696617,0.0001430846,0.0001075895,0.0003883122,0.0001558787,0.0001711438,0.0001251084,0.0001844512,0.0007005919],"category_scores_gemma":[0.00009986886,0.0001604757,0.0001422109,0.0001968351,0.0001161716,0.00006814268,0.0001362993,0.0002608002,0.0002763818],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002924978,"about_ca_system_score_gemma":0.00009803535,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0021613,"about_ca_topic_score_gemma":0.005515336,"domain_scores_codex":[0.9999379,0.000005552124,0.000002820533,0.00002711517,0.00001653068,0.000009947687],"domain_scores_gemma":[0.9999049,0.00001837342,0.00003729294,0.000006629517,0.00001106947,0.00002177611],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005664087,0.000006687352,0.001922381,0.00001767278,0.000006683877,0.00001391773,0.00001471377,0.00004217425,0.9965597,0.00003170584,0.0000609274,0.001266907],"study_design_scores_gemma":[0.00003406025,0.0001913482,0.591017,0.0000167243,0.00006288691,0.0005341456,0.00008508086,0.001593588,0.3990736,0.0002066967,0.007166598,0.00001816914],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958789,0.0004983964,0.001693411,0.00003451825,0.000003714829,0.00001197925,0.001216217,0.00004306592,0.0006197307],"genre_scores_gemma":[0.9890229,0.0003614643,0.004237829,0.00009776567,0.000005197317,0.00003013177,0.004418802,0.00002728138,0.001798723],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0021613,"threshold_uncertainty_score":0.004297495,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008174058770720203,"score_gpt":0.2121728673203475,"score_spread":0.2039988085496273,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}