{"id":"W2136585723","doi":"10.1093/gbe/evp027","title":"Evolution of the Mitochondrial Genomes of Gall Midges (Diptera: Cecidomyiidae): Rearrangement and Severe Truncation of tRNA Genes","year":2009,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Hymenoptera taxonomy and phylogeny","field":"Agricultural and Biological Sciences","cited_by":74,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Brown University","keywords":"Biology; Cecidomyiidae; Transfer RNA; Genome; Mitochondrial DNA; Gene; Genetics; Gall; Sciaridae; Gene rearrangement; Evolutionary biology; RNA; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001522079,0.0000991073,0.0001957616,0.00001796496,0.0001086097,0.000003475038,0.0001095291,0.0001286019,0.00003329806],"category_scores_gemma":[0.00001359202,0.00004134144,0.00005743612,0.0001329009,0.0001773658,0.0000525366,0.00003690526,0.00004899254,5.476761e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002609705,"about_ca_system_score_gemma":0.00001233724,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001455407,"about_ca_topic_score_gemma":0.0001414694,"domain_scores_codex":[0.9992303,0.0001187301,0.000272945,0.0001825644,0.00006264207,0.0001327816],"domain_scores_gemma":[0.9995725,0.00004527639,0.0002164079,0.00006592969,0.00007010506,0.00002980952],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001070441,0.00004286371,0.1014126,0.00001288221,0.00001626686,3.187671e-8,0.00009762857,0.000007529436,0.867976,0.001588088,0.000009263456,0.02872981],"study_design_scores_gemma":[0.0002261315,0.0005029044,0.9892169,0.00001165627,0.00002653986,0.000003990967,0.0001086574,0.00001417254,0.004041196,0.003066909,0.00270273,0.00007816878],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9924787,0.006520713,0.00005321357,0.0003360675,0.0001254338,0.0002354456,0.00006822139,0.000005894107,0.0001763124],"genre_scores_gemma":[0.9992888,0.0003016964,0.0001778289,0.00001808671,0.0001493306,0.000005435725,0.00002696704,3.908219e-7,0.00003143823],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8878043,"threshold_uncertainty_score":0.1685855,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01034755765873841,"score_gpt":0.1974509491617417,"score_spread":0.1871033915030033,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}