{"id":"W2136622057","doi":"10.1139/o11-028","title":"A PAS domain within F plasmid TraJ is critical for its function as a transcriptional activator","year":2011,"lang":"en","type":"article","venue":"Biochemistry and Cell Biology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Operon; Plasmid; Biology; Escherichia coli; Serine; PAS domain; Cysteine; Molecular biology; Mutant; Biochemistry; Gene; Transcription factor; Phosphorylation; Enzyme","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007977191,0.0001757935,0.0001832565,0.0001228278,0.0001416959,0.0001926001,0.0001831927,0.0002530625,0.0009987402],"category_scores_gemma":[0.0002177499,0.0001145382,0.0002107009,0.0001021583,0.0002612217,0.0001916521,0.0001382818,0.0004870133,0.0004373033],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002285853,"about_ca_system_score_gemma":0.0002571922,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006089776,"about_ca_topic_score_gemma":0.0005872974,"domain_scores_codex":[0.999928,0.00001211182,0.000005586944,0.00001398603,0.00002036073,0.00001992705],"domain_scores_gemma":[0.9997643,0.00005538424,0.00006171238,0.00002188872,0.00002177043,0.00007495582],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007154489,0.000008482746,0.0001941251,0.00001346271,0.000001867921,0.0000715436,0.000007817117,0.00005318184,0.9989665,0.000052847,0.00001032577,0.0005482904],"study_design_scores_gemma":[0.00001913454,0.0002215725,0.01900635,0.00000709126,0.00001234529,0.001251363,0.00003465276,0.001784338,0.9751875,0.00009888453,0.002363874,0.00001280813],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969167,0.0003065236,0.002144685,0.00003971606,0.00001003524,0.000006193865,0.00009961637,0.00004033338,0.0004362486],"genre_scores_gemma":[0.9976768,0.00008265683,0.001319819,0.00002324326,0.000004578554,0.000003725669,0.0002470731,0.00001226172,0.0006298953],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009987402,"threshold_uncertainty_score":0.003341079,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01708596825582228,"score_gpt":0.2285279874827255,"score_spread":0.2114420192269033,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}