{"id":"W2137147070","doi":"10.1186/gb-2013-14-9-r105","title":"Genome-wide signatures of differential DNA methylation in pediatric acute lymphoblastic leukemia","year":2013,"lang":"en","type":"article","venue":"Genome biology","topic":"Acute Lymphoblastic Leukemia research","field":"Medicine","cited_by":405,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine; McGill University","funders":"Uppsala Multidisciplinary Center for Advanced Computational Science; Stiftelsen för Strategisk Forskning; Barncancerfonden; Cancerfonden; Svenska Forskningsrådet Formas; Vetenskapsrådet","keywords":"Biology; Genome Biology; Human genetics; DNA methylation; Lymphoblastic Leukemia; Genome; Computational biology; Genetics; Genomics; Methylation; Human genome; DNA; Evolutionary biology; Gene; Leukemia; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002017409,0.0002707178,0.0006516114,0.0007217738,0.00004342474,0.00001243546,0.0002980126,0.0004444249,0.001067929],"category_scores_gemma":[0.0003273202,0.0002177514,0.0001317572,0.0005746235,0.0001988552,0.00007904832,0.0002105846,0.0003169249,0.0003270573],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001154501,"about_ca_system_score_gemma":0.0008323334,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000205012,"about_ca_topic_score_gemma":0.00001343547,"domain_scores_codex":[0.9977669,0.0001690849,0.0006354514,0.000496114,0.0002610686,0.0006713719],"domain_scores_gemma":[0.9984753,0.0005013152,0.0001933724,0.0004165604,0.0002041369,0.0002093711],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004284324,0.0001283148,0.05518999,0.0001662736,0.0002019263,0.00004384626,0.0002528466,0.00009985775,0.9419064,0.0001365738,0.0001801897,0.001265344],"study_design_scores_gemma":[0.003887862,0.0008359614,0.9880607,0.00001196493,0.0001837987,0.00003038628,0.00003518956,0.001138372,0.004501085,0.0007304269,0.0003393711,0.0002449114],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950112,0.0007663763,0.0021247,0.0002106513,0.0001965861,0.0007916898,0.0000298123,0.00004607846,0.0008229634],"genre_scores_gemma":[0.9976608,0.0004361731,0.0005384184,0.0001549742,0.0004173187,0.00009292238,0.0002555157,0.0000390319,0.0004048129],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9374053,"threshold_uncertainty_score":0.9998452,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01129747235375721,"score_gpt":0.2623608278675856,"score_spread":0.2510633555138284,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}