{"id":"W2137259971","doi":"10.1186/s12864-015-1836-2","title":"Candidate effectors contribute to race differentiation and virulence of the lentil anthracnose pathogen Colletotrichum lentis","year":2015,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Saskatchewan Pulse Growers","keywords":"Biology; Effector; Genetics; Virulence; Gene; Candidate gene; Comparative genomics; Population; Genome; Genomics; Cell biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001946887,0.00008788768,0.0001369456,0.00001122013,0.0001575381,0.00004777111,0.0001868107,0.00004434923,0.00002049538],"category_scores_gemma":[0.0001132357,0.00003328605,0.00004835302,0.0001624626,0.0000332701,0.00006672709,0.0001531987,0.00006684393,0.00001168834],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004738951,"about_ca_system_score_gemma":0.00001851925,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008104959,"about_ca_topic_score_gemma":0.003475722,"domain_scores_codex":[0.9993547,0.0001124788,0.0001644961,0.0001368832,0.00009034939,0.000141065],"domain_scores_gemma":[0.9995238,0.0001265064,0.0001166833,0.0000743651,0.00008112719,0.00007753891],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006723892,0.00005103142,0.05131588,0.000005863998,0.00001008901,3.664138e-7,0.0001565074,0.00002196866,0.9443383,0.00001457085,0.001090443,0.002927757],"study_design_scores_gemma":[0.0003938018,0.0001906425,0.831005,0.0000368881,0.00003744019,0.00001518041,0.0004408619,0.000266757,0.1377477,0.00006856745,0.02961414,0.0001830454],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983341,0.000178334,0.00004951,0.0002121168,0.0003240757,0.0002710049,0.0005795112,0.00001008045,0.00004131707],"genre_scores_gemma":[0.9994869,0.000085427,0.00005689979,0.00005937024,0.00004117612,0.000007124772,0.00004424926,7.825162e-7,0.0002180932],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8065906,"threshold_uncertainty_score":0.1939535,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01924784118542746,"score_gpt":0.2213077408582454,"score_spread":0.202059899672818,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}