{"id":"W2137287931","doi":"10.1099/mic.0.040089-0","title":"Outer membrane pore protein prediction in mycobacteria using genomic comparison","year":2010,"lang":"en","type":"article","venue":"Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ottawa Hospital","funders":"","keywords":"Biology; Mycobacterium bovis; Mycobacterium; Virulence; Microbiology; Actinobacteria; Mycobacterium tuberculosis; Membrane protein; Horizontal gene transfer; Bacterial outer membrane; Nontuberculous mycobacteria; Bacteria; Computational biology; Tuberculosis; Gene; Escherichia coli; Genetics; Phylogenetics; Membrane; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002388666,0.0001428607,0.0003484169,0.0001973401,0.00004084231,0.00001714879,0.00009951233,0.0002629806,0.001344835],"category_scores_gemma":[0.00008649038,0.0001231642,0.00005931437,0.0001177947,0.00010734,0.00005514111,0.00007386111,0.0004987509,0.0001538791],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007770965,"about_ca_system_score_gemma":0.0001149313,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002227738,"about_ca_topic_score_gemma":0.0002617275,"domain_scores_codex":[0.9988365,0.00007780341,0.000324574,0.0003043271,0.00004169516,0.0004150671],"domain_scores_gemma":[0.9994515,0.00003159541,0.00006597029,0.0002711859,0.00005519304,0.0001245917],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002255807,0.0001255642,0.1995144,0.00004725207,0.0000174552,0.00004464045,0.00007427471,9.254921e-7,0.7991003,0.0000127082,0.0005485793,0.0002883046],"study_design_scores_gemma":[0.003075184,0.0004956414,0.3013325,0.0001102799,0.00003850777,0.0008559034,0.00004616071,0.0003764544,0.6550527,0.0000219542,0.03836362,0.0002311717],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979567,0.00004623589,0.00002502438,0.0004201535,0.0004116376,0.0006443282,0.00008470236,0.00004414731,0.0003670507],"genre_scores_gemma":[0.9969864,0.000006410968,0.001758768,0.0001930389,0.0003002304,0.00003964591,0.0004466326,0.0000200129,0.0002488652],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1440477,"threshold_uncertainty_score":0.999568,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02372356866899082,"score_gpt":0.2965017706906278,"score_spread":0.2727782020216369,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}