{"id":"W2137287931","doi":"10.1099/mic.0.040089-0","title":"Outer membrane pore protein prediction in mycobacteria using genomic comparison","year":2010,"lang":"en","type":"article","venue":"Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ottawa Hospital","funders":"","keywords":"Biology; Mycobacterium bovis; Mycobacterium; Virulence; Microbiology; Actinobacteria; Mycobacterium tuberculosis; Membrane protein; Horizontal gene transfer; Bacterial outer membrane; Nontuberculous mycobacteria; Bacteria; Computational biology; Tuberculosis; Gene; Escherichia coli; Genetics; Phylogenetics; Membrane; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000994422,0.0005191556,0.0005638078,0.002572529,0.0005084092,0.000963601,0.0004390219,0.0006952778,0.001023227],"category_scores_gemma":[0.003725607,0.0002092212,0.0006128486,0.002198828,0.0002702518,0.0005100372,0.0007511514,0.0003505906,0.0007663903],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002620953,"about_ca_system_score_gemma":0.0004520469,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00115091,"about_ca_topic_score_gemma":0.001425448,"domain_scores_codex":[0.9993619,0.0002076223,0.00005885094,0.0001956185,0.0001113564,0.00006457707],"domain_scores_gemma":[0.9989042,0.000566543,0.0001415518,0.00007799158,0.0002096749,0.00009999562],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002904487,0.0005237693,0.1724337,0.0009680303,0.0003340622,0.002340357,0.0008484396,0.02622812,0.5819222,0.001177021,0.001558331,0.2087615],"study_design_scores_gemma":[0.000241674,0.001563527,0.3801099,0.0001973892,0.0006207718,0.003518996,0.001687219,0.4219675,0.172594,0.003840092,0.01353989,0.0001190146],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9613615,0.0007656068,0.0349163,0.00007784933,0.00001517316,0.00006024853,0.001232121,0.0006588786,0.0009124113],"genre_scores_gemma":[0.8996731,0.0003043145,0.09191404,0.00005949096,0.0000154312,0.00005084718,0.007513652,0.0001183123,0.0003508462],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002572529,"threshold_uncertainty_score":0.005259097,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02372356866899082,"score_gpt":0.2965017706906278,"score_spread":0.2727782020216369,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}