{"id":"W2137309356","doi":"10.1093/nar/gkl120","title":"Automated extraction and classification of RNA tertiary structure cyclic motifs","year":2006,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Stacking; Biology; RNA; Base pair; Protein tertiary structure; Ribosomal RNA; Structural motif; Computational biology; Nucleotide; Crystallography; Genetics; DNA; Biochemistry; Gene; Chemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003648281,0.00008590013,0.00009111706,0.00009192735,0.0001057082,0.00002747236,0.0001375897,0.0002130889,0.00005673719],"category_scores_gemma":[0.00008003834,0.00007761992,0.00003040479,0.0001228629,0.0001248851,0.000007239464,0.00006548211,0.0001229551,0.000008619643],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001479705,"about_ca_system_score_gemma":0.00003562989,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006184755,"about_ca_topic_score_gemma":0.00001627929,"domain_scores_codex":[0.9989126,0.0001762094,0.0001727474,0.0002644213,0.0002645447,0.0002094475],"domain_scores_gemma":[0.9994588,0.00002370032,0.00005675579,0.0002853029,0.0001295698,0.00004584597],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004265747,0.00003068651,0.002300068,0.00002509977,0.00001056134,0.000001134034,0.00001398672,0.00000561246,0.984943,0.0002639544,0.001226894,0.0111363],"study_design_scores_gemma":[0.0001681489,0.0001019507,0.1291707,0.00001208844,0.000004073707,0.000009671165,0.00004144158,0.0007760828,0.8660457,0.000912417,0.002684185,0.0000735451],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971099,0.000340081,0.0005317508,0.0001756607,0.00003979126,0.0001998772,0.00001516048,0.0000283976,0.001559379],"genre_scores_gemma":[0.9980072,0.00007317949,0.001231804,0.0000111861,0.0001281368,0.00001303126,0.00005794065,0.00001888875,0.0004586097],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1268707,"threshold_uncertainty_score":0.3165248,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02305641376519444,"score_gpt":0.3200995931367373,"score_spread":0.2970431793715428,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}