{"id":"W2137490801","doi":"10.1093/nar/gks993","title":"ClusterMine360: a database of microbial PKS/NRPS biosynthesis","year":2012,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":130,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Genomics; University of Ottawa","funders":"Ontario Ministry of Research and Innovation; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; University of Ottawa","keywords":"Biology; Polyketide synthase; Polyketide; Gene; Database; Gene cluster; Ribosomal RNA; Annotation; Consistency (knowledge bases); Computational biology; Genetics; Biosynthesis; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001102807,0.004215562,0.00400119,0.008329443,0.001487226,0.002917429,0.003144182,0.001765317,0.02638174],"category_scores_gemma":[0.003148624,0.001739417,0.001920587,0.01223464,0.0005027683,0.003096857,0.002226814,0.001899323,0.03719196],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001552047,"about_ca_system_score_gemma":0.003194142,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003570535,"about_ca_topic_score_gemma":0.004089852,"domain_scores_codex":[0.9988896,0.0001362575,0.0002180207,0.0003623774,0.0002686928,0.0001250429],"domain_scores_gemma":[0.9987391,0.0001814045,0.0002635113,0.000245138,0.0002649754,0.0003059246],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.01131548,0.0006005538,0.01340179,0.02647688,0.000958542,0.002545298,0.001114195,0.007548946,0.2411893,0.008098643,0.4796056,0.2071448],"study_design_scores_gemma":[0.0006860502,0.0004544636,0.01286845,0.0006772729,0.000473986,0.001772747,0.000246475,0.008037929,0.03730109,0.005433398,0.9317065,0.0003416309],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.02408822,0.007781415,0.01914284,0.0002026352,0.000137301,0.0002121536,0.904383,0.03427018,0.00978218],"genre_scores_gemma":[0.0131656,0.002132562,0.03355732,0.00006983071,0.00002800426,0.0002015798,0.9476125,0.001604728,0.00162787],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.02638174,"threshold_uncertainty_score":0.0882557,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06706502736086647,"score_gpt":0.3511968865972269,"score_spread":0.2841318592363604,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}