{"id":"W2137816722","doi":"10.1007/s10482-012-9790-3","title":"Phylogenetic framework and molecular signatures for the class Chloroflexi and its different clades; proposal for division of the class Chloroflexi class. nov. into the suborder Chloroflexineae subord. nov., consisting of the emended family Oscillochloridaceae and the family Chloroflexaceae fam. nov., and the suborder Roseiflexineae subord. nov., containing the family Roseiflexaceae fam. nov.","year":2012,"lang":"en","type":"article","venue":"Antonie van Leeuwenhoek","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Chloroflexi (class); Biology; Phylogenetic tree; Clade; Genus; Evolutionary biology; Zoology; Botany; 16S ribosomal RNA; Genetics; Bacteria; Proteobacteria; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts"],"consensus_categories":["metaepi_narrow","sts"],"category_scores_codex":[0.003447075,0.001542958,0.001605938,0.0001244337,0.003143231,0.0004137131,0.002100514,0.0007723698,0.000005029819],"category_scores_gemma":[0.001494711,0.0006668197,0.0007632461,0.0006931719,0.006094493,0.00004685304,0.002322638,0.001279749,0.000001089745],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000757333,"about_ca_system_score_gemma":0.0004655149,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005337844,"about_ca_topic_score_gemma":0.0004724629,"domain_scores_codex":[0.9931348,0.0008578587,0.001712557,0.001559597,0.001008961,0.001726235],"domain_scores_gemma":[0.9916462,0.003370774,0.001520083,0.002236816,0.0009581186,0.0002679833],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.007073916,0.0004144212,0.01615564,0.0006640122,0.002712818,0.000002256701,0.01259213,0.0006248149,0.896917,0.05405623,0.001054799,0.007731935],"study_design_scores_gemma":[0.03735917,0.003543429,0.4194081,0.0009938239,0.005338799,0.0001353617,0.03729034,0.01439998,0.3772145,0.02735165,0.07225626,0.004708592],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8657107,0.1140217,0.001579109,0.01056757,0.001087853,0.00643168,0.0003690033,0.00002919438,0.0002032581],"genre_scores_gemma":[0.9835722,0.008645327,0.0003642004,0.005361651,0.0006107334,0.0009735323,0.00005081416,0.0002283546,0.0001931857],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5197026,"threshold_uncertainty_score":0.9997319,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01273110791710235,"score_gpt":0.2567176282953774,"score_spread":0.2439865203782751,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}