{"id":"W2138176666","doi":"10.1104/pp.127.1.230","title":"The Phenylalanine Ammonia-Lyase Gene Family in Raspberry. Structure, Expression, and Evolution","year":2001,"lang":"en","type":"article","venue":"PLANT PHYSIOLOGY","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":142,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; University of British Columbia","keywords":"Ripening; Biology; Gene; Phenylalanine ammonia-lyase; Phenylpropanoid; Blowing a raspberry; MADS-box; Gene expression; Gene family; Rubus; Phenylalanine; Botany; Genetics; Amino acid; Horticulture; Biosynthesis; Arabidopsis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001210563,0.0001785994,0.0001955421,0.00006028253,0.0001466755,0.00001554253,0.0002208228,0.000167046,0.00001167489],"category_scores_gemma":[0.00007323578,0.0001215428,0.00004583795,0.0001116823,0.0001004282,0.000004948392,0.0001708165,0.000128368,0.00000572664],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001527455,"about_ca_system_score_gemma":0.0000379492,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008401604,"about_ca_topic_score_gemma":0.0003432124,"domain_scores_codex":[0.9987423,0.000153593,0.0002327909,0.0004183198,0.00009846414,0.0003545454],"domain_scores_gemma":[0.9993831,0.00004904014,0.0001017344,0.0003491743,0.00003266056,0.0000843238],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003135351,0.00002618098,0.004078455,0.000002756474,0.00002941501,0.00001061578,0.00001500331,0.0001678109,0.9826392,0.00003009054,0.01244163,0.0002453336],"study_design_scores_gemma":[0.002055824,0.0002096044,0.2382696,0.00003459233,0.00004727588,0.0001804787,0.0001993688,0.001685463,0.6946186,0.002058607,0.06006828,0.0005723594],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975968,0.001642456,0.0001368263,0.0001016749,0.0001235919,0.0001098648,0.0001274284,0.00001218031,0.0001492001],"genre_scores_gemma":[0.9965248,0.001864659,0.000212528,0.0002495844,0.0001883317,0.00001747384,0.0006401805,0.00001311425,0.0002893273],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2880206,"threshold_uncertainty_score":0.4956373,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005948136441092737,"score_gpt":0.2141192908768768,"score_spread":0.2081711544357841,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}