{"id":"W2138448649","doi":"10.1371/journal.pone.0012786","title":"PRNP Haplotype Associated with Classical BSE Incidence in European Holstein Cattle","year":2010,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Prion Diseases and Protein Misfolding","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Fondazione Cariplo; Department for Environment, Food and Rural Affairs, UK Government; U.S. Department of Agriculture","keywords":"PRNP; Haplotype; Biology; Linkage disequilibrium; Genetics; Bovine spongiform encephalopathy; Single-nucleotide polymorphism; Indel; Genotype; Gene; Prion protein; Disease; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007186928,0.0002234019,0.0002709698,0.001068244,0.0003349693,0.0003392408,0.0002133761,0.0004219098,0.002150946],"category_scores_gemma":[0.001314984,0.0001418926,0.0001407208,0.0006030431,0.0004627729,0.0002017751,0.0002426362,0.0002348287,0.0001616762],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001609931,"about_ca_system_score_gemma":0.00007184156,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008459295,"about_ca_topic_score_gemma":0.001069417,"domain_scores_codex":[0.9994886,0.0001539188,0.00005065528,0.0001674227,0.00007380428,0.00006570802],"domain_scores_gemma":[0.9988629,0.0004700979,0.0003807377,0.00005104893,0.00007644535,0.0001589211],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001060346,0.00008669517,0.977449,0.00002221669,0.0001406474,0.0008915395,0.0002601707,0.0001527742,0.01584069,0.00006880806,0.00007653303,0.003950579],"study_design_scores_gemma":[0.00001780142,0.0001581745,0.9978807,0.000004930122,0.00003943896,0.0009409949,0.0000763594,0.0002443727,0.0005048547,0.00004624851,0.00008316932,0.000002975665],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997669,0.00003481529,0.00007753513,0.000004197449,8.179858e-7,0.000001050782,0.00003109865,0.000001107424,0.00008255673],"genre_scores_gemma":[0.9997396,0.00001560649,0.00009940104,0.000005589819,0.000002693446,0.000001578473,0.00006986738,0.000001123226,0.00006446215],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002150946,"threshold_uncertainty_score":0.007195652,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01991020116667044,"score_gpt":0.2193906902742716,"score_spread":0.1994804891076012,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}