{"id":"W2138453085","doi":"10.1093/bioinformatics/bts430","title":"Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling data","year":2012,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":158,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Institutes of Health; Michael Smith Health Research BC","keywords":"Computer science; License; Gemma; Profiling (computer programming); Plug-in; Software; World Wide Web; Data science; Database; Information retrieval; Biology; Operating system","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["open_science"],"consensus_categories":[],"category_scores_codex":[0.01050153,0.002713172,0.002839214,0.008761039,0.001396443,0.004131544,0.006556887,0.001688152,0.02088204],"category_scores_gemma":[0.0180162,0.001829847,0.002661359,0.007835286,0.0009268165,0.004561177,0.006393847,0.0034311,0.01668082],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001276154,"about_ca_system_score_gemma":0.0037899,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00324258,"about_ca_topic_score_gemma":0.003591598,"domain_scores_codex":[0.9963627,0.0008385554,0.000407427,0.001008678,0.001125468,0.0002571362],"domain_scores_gemma":[0.9898178,0.003308664,0.0009038171,0.003933143,0.0009492969,0.001087267],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003068913,0.0004070109,0.01389174,0.005655226,0.003256163,0.001126855,0.001309393,0.01162424,0.07371938,0.01866116,0.5507733,0.3165067],"study_design_scores_gemma":[0.0007222832,0.0002885954,0.01834659,0.0009323345,0.001663005,0.001329565,0.0003218986,0.08076994,0.07359286,0.04891517,0.7725089,0.0006089646],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.008264328,0.002368542,0.4203351,0.001226072,0.0005596937,0.0005592767,0.1288346,0.4318619,0.005990434],"genre_scores_gemma":[0.06378341,0.001913919,0.5187754,0.001020206,0.0003655785,0.001731594,0.339159,0.0685764,0.00467446],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.9934431,"threshold_uncertainty_score":0.06985736,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1543445386825175,"score_gpt":0.3402158842362292,"score_spread":0.1858713455537117,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}