{"id":"W2138572375","doi":"10.1128/jcm.44.3.777-782.2006","title":"Single-Nucleotide Repeat Analysis for Subtyping <i>Bacillus anthracis</i> Isolates","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; Public Health Agency of Canada; Defence Research and Development Canada","funders":"","keywords":"Multiple Loci VNTR Analysis; Bacillus anthracis; Subtyping; Biology; Variable number tandem repeat; Genetics; Genotype; Locus (genetics); Microsatellite; Genetic diversity; Tandem repeat; In silico; Computational biology; Genome; Gene; Population; Bacteria; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000427607,0.0002465813,0.0002961011,0.001223011,0.0002305111,0.0003263636,0.0002447407,0.0003110414,0.0005524105],"category_scores_gemma":[0.001308683,0.0001543896,0.00031351,0.0006330168,0.0001638431,0.0001581555,0.0001607042,0.0002827368,0.000385358],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001477201,"about_ca_system_score_gemma":0.000239416,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009488188,"about_ca_topic_score_gemma":0.001630296,"domain_scores_codex":[0.9995087,0.0001489569,0.0000539628,0.00008887812,0.0001515617,0.00004783362],"domain_scores_gemma":[0.9993942,0.0001956088,0.0001347084,0.00004560156,0.0001392612,0.00009059037],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002208742,0.00008913,0.02235045,0.0001030913,0.00002071235,0.0001277468,0.0000608258,0.0003165604,0.9659411,0.00005501624,0.00007058824,0.01064396],"study_design_scores_gemma":[0.00003877548,0.001318335,0.1352574,0.00005135148,0.0001720546,0.002645151,0.0002215687,0.006772005,0.8510265,0.0001464687,0.002319465,0.0000309238],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9761821,0.0007715852,0.02049868,0.00008259496,0.00002183426,0.0001034415,0.000976451,0.0001511178,0.001212123],"genre_scores_gemma":[0.9572567,0.0005261593,0.04037516,0.00002997103,0.00001088684,0.00004789865,0.001405308,0.00002093289,0.0003268964],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001223011,"threshold_uncertainty_score":0.0022614,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03611395628353021,"score_gpt":0.3363613392951464,"score_spread":0.3002473830116162,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}