{"id":"W2138708491","doi":"10.1186/gb-2013-14-3-r28","title":"The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage","year":2013,"lang":"en","type":"article","venue":"Genome biology","topic":"Turtle Biology and Conservation","field":"Environmental Science","cited_by":330,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Carleton University; University of British Columbia","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; Division of Environmental Biology; Division of Integrative Organismal Systems; Wellcome Trust; National Human Genome Research Institute; Biotechnology and Biological Sciences Research Council; National Institute of General Medical Sciences; Iowa State University; Medical Research Council; RIKEN; Vedecká Grantová Agentúra MŠVVaŠ SR a SAV; Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Biology; Turtle (robot); Vertebrate; Painted turtle; Lineage (genetic); Evolutionary biology; Context (archaeology); Genome; Phylogenetic tree; Phylogenetics; Gene; Convergent evolution; Zoology; Genetics; Ecology; Paleontology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001041145,0.0002998178,0.0001758798,0.0004329723,0.0002490285,0.0004494011,0.0002935693,0.0003638724,0.001189141],"category_scores_gemma":[0.0003011295,0.0001086144,0.0002848493,0.0005875113,0.0002301139,0.0004023972,0.0002643401,0.0003380439,0.0002762406],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002403498,"about_ca_system_score_gemma":0.0002078997,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00234054,"about_ca_topic_score_gemma":0.003104543,"domain_scores_codex":[0.9999576,0.0000055755,0.000001535872,0.00002431065,0.000005102251,0.000005923509],"domain_scores_gemma":[0.9999087,0.00001696776,0.00003601161,0.000009990768,0.00001256131,0.00001587571],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001393123,0.0001051129,0.1177362,0.0009601722,0.000455833,0.002559403,0.001498923,0.01766175,0.7778798,0.01520449,0.006101577,0.05844359],"study_design_scores_gemma":[0.0001679942,0.0009522832,0.7529098,0.0003472145,0.0007856569,0.006376868,0.001022878,0.06407601,0.02476177,0.02194872,0.126537,0.0001137582],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9598124,0.00349962,0.02677277,0.0005252981,0.00006645458,0.00004513693,0.004853897,0.0006091551,0.003815136],"genre_scores_gemma":[0.9565836,0.001565887,0.02594704,0.0003812719,0.00004498698,0.00008242805,0.01321555,0.0001190371,0.002060183],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00234054,"threshold_uncertainty_score":0.004653871,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04231149260422568,"score_gpt":0.2374598153581982,"score_spread":0.1951483227539726,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}