{"id":"W2138713372","doi":"10.2144/04376rr02","title":"Microarray Genotyping Resource to Determine Population Stratification in Genetic Association Studies of Complex Disease","year":2004,"lang":"en","type":"article","venue":"BioTechniques","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"","keywords":"Genotyping; Genetics; Biology; Single-nucleotide polymorphism; SNP genotyping; Population stratification; SNP; Genotype; Genetic association; Population; Tag SNP; DNA microarray; Computational biology; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003561999,0.00009987798,0.0001714011,0.00009172034,0.00004483177,0.000006150474,0.00009721144,0.0001491141,0.00000187432],"category_scores_gemma":[0.0006662845,0.0001042317,0.00004758177,0.0001274675,0.00002134854,0.000002682699,0.00004689088,0.00004657343,0.000001613307],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001488706,"about_ca_system_score_gemma":0.00003435979,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001499048,"about_ca_topic_score_gemma":0.0002448009,"domain_scores_codex":[0.9990444,0.0001005009,0.0003672346,0.0002436526,0.00008273294,0.0001614662],"domain_scores_gemma":[0.9994108,0.00002645109,0.0002059568,0.0002153783,0.00009497343,0.0000464281],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003827894,0.00005897184,0.1172725,0.00002677766,0.00002756572,5.472691e-7,0.0001296715,0.001725556,0.8758653,0.00008722574,0.0006914072,0.004076277],"study_design_scores_gemma":[0.0001987886,0.0001465994,0.9056621,0.0000388509,0.0000157282,6.69473e-7,0.00006656942,0.00004194352,0.09053316,0.001311101,0.001839088,0.0001453545],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9881276,0.0004980405,0.0097561,0.001183502,0.00002574184,0.0003273272,0.00001773057,0.00001969075,0.0000442461],"genre_scores_gemma":[0.9613618,0.0001859261,0.03785564,0.0002846152,0.00006396094,0.00004151927,0.0001452692,0.00001079932,0.00005044133],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7883897,"threshold_uncertainty_score":0.4250446,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03910942033950696,"score_gpt":0.3216819257732227,"score_spread":0.2825725054337157,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}