{"id":"W2138848739","doi":"10.1186/gb-2014-15-2-r37","title":"The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts","year":2014,"lang":"en","type":"article","venue":"Genome biology","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":467,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University and Génome Québec Innovation Centre; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; DNA methylation; Human genetics; Genetics; Genetic variation; Human genetic variation; Variation (astronomy); DNA; Methylation; Evolutionary biology; Human genome; Epigenetics; Computational biology; Gene expression; Genome; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006675094,0.000130084,0.0001265382,0.00007725811,0.0002335353,0.00003158051,0.0001541596,0.0002400671,0.000004719905],"category_scores_gemma":[0.0002403504,0.0001038946,0.00003353788,0.00007480619,0.00009825127,0.00000470945,0.00007881135,0.0001025315,0.000004038061],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001458117,"about_ca_system_score_gemma":0.00002160788,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001744573,"about_ca_topic_score_gemma":0.0001221546,"domain_scores_codex":[0.9987065,0.0003493961,0.0003364687,0.0003157817,0.00006374031,0.0002280828],"domain_scores_gemma":[0.9993157,0.0002325149,0.000113466,0.0002450887,0.00003712227,0.00005605904],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001301039,0.000007000737,0.2173647,0.000005862786,0.00001079825,5.452327e-8,0.0001496592,0.00002789794,0.7770823,0.0005307391,0.000004420374,0.004803597],"study_design_scores_gemma":[0.000425903,0.0002631135,0.9385499,0.000006541503,0.000009803884,5.673722e-7,0.00001525998,0.00002229618,0.04174757,0.01179269,0.007034441,0.0001318972],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9658576,0.0009639408,0.03253701,0.0001564683,0.00007103958,0.0002007427,0.00001190284,0.000008280429,0.0001930028],"genre_scores_gemma":[0.9985225,0.0001140555,0.0006651992,0.00002553337,0.0002567942,0.00002539763,0.0003182566,0.00001474082,0.00005750017],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7353347,"threshold_uncertainty_score":0.42367,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02318142749232145,"score_gpt":0.2808660682736946,"score_spread":0.2576846407813732,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}